Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01481 CAATGATGATGCAACTTCTCAATGCTACAGCACACGCATTTATTGCATGCTTCAGCTTGAAACTCGCTGATCATACTTGCAAGCAAGCCCCCGTCCAATAGCAATGCCACCTCAAATCAACTTTTTAACATCTCCAACTCCTTCACTATTTATTTATGCTCCCATTGCTTTGAGTGCCTCAAGTGCCTTCTGGGGTGGACTTTAAAGGGTACTCTGAGTTGTTGGTTGTGATTTTACTCTGTTAATGTTCTGTGGTGTGTGTTGTTGAGACTTGAGAGTTGGAGAAACAATGGGAAGGACACCTTGTTGTGACAAGAAGGGTTTGAAGAAAGGACCTTGGACAGCTGAAGAGGATGAAATTCTTGCTAGTTATATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTTAGGTGGACTAACTATCTCAGACCTGACATTAAGCGTGGTCCCTTCACTCTCGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCCTCTCAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTATGGAACACCCACTTGAAGAAGCGCCTGAAAAGCATGGGGCTTGATCCCAAAACCCATGAGCCATTGGCCTCATCAACTTATCCTTTTCACAAGGCACCTGCATCTGTCTCCACACGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCTGAGGCTAGGCTCTCAAATGAGTCATCAAGGTTCAGCCGCAACACCACCTATCCCAATTCAGATGTCAAAACCACTGATTCTGACTACTTTCTCCGCATTTGGAACTCTGAAGTTGGAGAGGCATTTCGCAATGTTCATCACAAAACTGATAACAACAAAATCAGTAACACTGGCTCTTGCCACAGTCCTCTTTCTGCAGGATCATCTTCCAACAAGTGTGAGTCCATTACAACAAATGCAGACTTGGCTTCTAATGCACAAGAAATTTCACTCTCAAACATTGTGAAACAAGAGTTGGAGTGGACTCGTGGATCTGACTCATCAAGCTCTAATGACATGGAAGATTCATCGGACACTGCTTTGCAGCTCTTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTGGAAGGAAACTCTTTTGTTTGTCCAATT 1201 0.4421 MGRTPCCDKKGLKKGPWTAEEDEILASYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPKTHEPLASSTYPFHKAPASVSTRHMAQWESARLEAEARLSNESSRFSRNTTYPNSDVKTTDSDYFLRIWNSEVGEAFRNVHHKTDNNKISNTGSCHSPLSAGSSSNKCESITTNADLASNAQEISLSNIVKQELEWTRGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEGNSFVCPI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01481 304 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pste5g01481 304 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pste5g01481 304 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pste5g01481 304 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pste5g01481 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pste5g01481 304 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pste5g01481 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 256 - -
Pste5g01481 304 FunFam Myb transcription factor 11 68 - -
Pste5g01481 304 Gene3D - 11 68 - -
Pste5g01481 304 CDD SANT 16 62 IPR001005 -
Pste5g01481 304 FunFam MYB transcription factor 70 117 - -
Pste5g01481 304 CDD SANT 70 113 IPR001005 -
Pste5g01481 304 Gene3D - 69 134 - -
Pste5g01481 304 SMART sant 67 115 IPR001005 -
Pste5g01481 304 SMART sant 13 64 IPR001005 -
Pste5g01481 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01481 Pste-Chr5 9486380 9488910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01481 1 298 MYB Transcription Factor Family AT3G61250 65.232 3.71e-126 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g01481 Myb_DNA-binding 1.6e-13 CL0123