Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01480 TGAAAAGTGAGATAAAACAAGAAAAAGAGGGGGCCATCAGCCATGAAGCAATAATCAGATAACCCATTTTAACGCCCTAACCTCACCAAATCAAAATTCATTGATTTCACAACAAAAAATTCAAGAGAAAGAAAACCACACTCTTTTTTCCTTCCGTCTCCCTTTAACAAAATCTCTCCCTCTAATCAAATCCACCTCTCCAACTGCTGTAGATCTGTACAAATTCTCGCTCCAAATCCTTACCCAATTTATTTTTGGGTCTTTGTATGATACCCTGAGAAATTCCGGATTTTTCCTCTCAGATTTTGTTAGTTTAGGCTCCAATCGCAACCCCATTTCGAGAATTGACCGTTCGCAAACGGGGCTTCGAATTCAGCGACCCTCGAGAAAACCCTAGCTTCGTGCTTTATAGAGTTTAGCAGCGTCTTGTACATTGTTTTTGCGTAGATTTTTTTTTTTTTTAGATCGGAGGGATGAATAATAGAGATAGAGAGAGGTACCCACCTGGGATGGGATTAGGACGAGGGATGAATTCAAACCCTGGGTTTCAACCGAGGCCACAGCAGTATGTGCAGAGGCACATGGTGCAACATCAGCATCATCATCATCCGCAGCAGTATCAGCAGAACCATCATCATCATCACCAGCAGCAACTACATCATCAACATCAGCAGCAGCAGCAGCAGCAACAACAGTGGTTGAGAAGGAACCAGTTAGGTGGTGGGACCGACTCCAATGTCGTCGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCCGTTGACTCAAGGTTTTGGGATGAGGCATTTTCAACGGTTAGTTACTTGTGTCGTGTGGATGAGTGGTTGACTGCCTATTGCTTATGTGTGTTAGAGGATGTTTCTCAAGATTGGAAGGCAAGACTAAATATTCCACCACCCGATACACGCTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAGTTTGAGGATTATTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCATCTCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACCGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACTGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTAATATTGGTTCCAACACGAGAACTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGTCTGAAAGATGATATTATGCGTTTATATCAACCAGTTCATCTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCTAAGAAGGGTGTCTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCAATAGAGCAGTTGATTCAATTTCTTCCTGGAAATCGTCAAATCTTGATGTTTTCTGCTACATTTCCTGTTACTGTTAAGGACTTCAAAGATAGATATCTTCGTAAGCCATACGCCATTAACCTTATGGATGAGCTAACTCTGAAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATTGACATCCAAGCAGTCAATGTTGTAATTAATTTTGATTTCCCAAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCTGGGAGGTTTGGGCACCTAGGTTTAGCCGTGAACCTGATCACCTATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCACCACACATTGATCAGGCAATATATTGCCGGTAA 1898 0.4136 MNNRDRERYPPGMGLGRGMNSNPGFQPRPQQYVQRHMVQHQHHHHPQQYQQNHHHHHQQQLHHQHQQQQQQQQQWLRRNQLGGGTDSNVVEEVEKTVQSEAVDSRFWDEAFSTVSYLCRVDEWLTAYCLCVLEDVSQDWKARLNIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPGNRQILMFSATFPVTVKDFKDRYLRKPYAINLMDELTLKDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01480 474 Gene3D - 360 447 IPR027417 -
Pste5g01480 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 364 IPR027417 -
Pste5g01480 474 Pfam DEAD/DEAH box helicase 188 352 IPR011545 GO:0003676|GO:0005524
Pste5g01480 474 SMART ultradead3 182 375 IPR014001 -
Pste5g01480 474 SMART helicmild6 352 432 IPR001650 -
Pste5g01480 474 CDD SF2_C_DEAD 376 441 - -
Pste5g01480 474 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 163 191 IPR014014 GO:0003724
Pste5g01480 474 MobiDBLite consensus disorder prediction 37 62 - -
Pste5g01480 474 MobiDBLite consensus disorder prediction 1 75 - -
Pste5g01480 474 FunFam ATP-dependent RNA helicase DDX6 144 367 - -
Pste5g01480 474 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 310 318 IPR000629 -
Pste5g01480 474 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 364 IPR014001 -
Pste5g01480 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 468 IPR027417 -
Pste5g01480 474 Gene3D - 159 359 IPR027417 -
Pste5g01480 474 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 67 373 - -
Pste5g01480 474 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 471 IPR001650 -
Pste5g01480 474 CDD DEADc_DDX6 165 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01480 Pste-Chr5 9466984 9472882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01480 163 467 Eukaryotic Initiation Factors Gene Family AT1G72730 33.514 7.78e-67 218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01480 5 9466984 9472882 Pste5g01480 5 9466984 9472882 ECH