Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01447 CAAAAGAAATCCATATTGTGACGGTGAGTGTGATTGATCCCTAATCTGAAAAAACCCTAGTGCCCCTATCTGCACTCCACTAGAAGAGCAATTGGCCATGGGGAGGAAGCGAAAGATAGCGCCGAAATCTTCTCAATCCGCCGAACCCCCACTGAAGCACCACCAGCCAGAGCCTGAGAGTGCGCATCATGAGTATGATGAAGTTGAAGAGGAAGTAGAGGAGGAAGAGGTAGAAGAAGAAGTGGAGGAGGAAGAGGACGATGAAGAGGAAGAAGACGAAGAAGATGAAGACGACCACCAGCAAGACGAAGACGACGATCCAATCTCGAAGCTTCTCGAACCTCTGAGCAAGGATCAGATCCTAATTCTTCTGTGCGATGCGGCGGCGAAGCATCGCGACGTGGCGGATCGGATCCGCAAGGCGGCCGACGACGATCCCGTGCACAGGAAAATCTTCGTGCACGGGCTTGGCTGGGACACTACCGCCGGAACCCTAATCAGCGCTTTCCGCCAGTACGGCGAGATCGAGGACTGCAAAGCAGTCACCGACAAGGTTTCCGGCAAGTCCAAGGGCTACGGCTTCATTCTCTTCAAGACGCGCCGCGGTGCGCGCAACGCGCTTAAGCAGCCGCAGAAGAAGATCGGGAACCGCATGACGGCGTGTCAGCTGGCGTCTATCGGTCCCGTGAGTAACAGCCAGAGTCAGGCGCAGGTGCCGGTTCCGTCGGTGCCGACGCCGTCGTCTTCGGTGTCGGAGTACACTCAGAGGAAGATATACGTGAGCAACGTGGGCGCGGAGCTGGATCCGCAGAAGCTTCTGGCGTTTTTCTCGCGGTTTGGGGAAATCGAGGAAGGACCCTTGGGGCTTGACAAGCAAACCGGAAAACCTAAGGGGTTTTGTTTGTTTGTTTACAGGAGTGCGGAGAGTGCAAGGAGAGCCTTGGAGGAGCCTCACAAGGATTTTGAGGGACACATTTTGCATTGCCAGAAGGCGATTGATGGCCCTAAGCCAGGGAAGTTGCAGCAACCACACGGGAATCTAAGTGCTCCCGTCCAGCGGGCACAATTTCAGAGGAATGATACCGGTAACGCTTCTACTGCTGGGTATGTCGGTGGTGCCGGTACCGCTCAACCTGGGCACTTGATGGCCCCTGCCGGGCCCGGACTTGGGTTTAGTCAGGCGGCTGCTGCGCAGGCTGCGTTGAATCCGGCATTAGGGCAGGCCTTGACGGCGTTGCTAGCATCGCAGGGGACGTTGGGGCTGACCAATTTGTTGGGGAGTATTGGAACGAGTGGTGCGGTTAACCCTAGTAGTGTGCCTTCTGCTGGGGCTTCAGTGCAGAGTGGTTACAGTGGCCAGCCTAATATAAGTCCTGGTGTTATTGGTGGATATGGGAATCAGGTGGGTTTGCAGGTGGCGTATCCAAATCCAAATCAGCAGATAGGGCAGGGTGGCTCTGGAAGAGGACAATATGGTAGTGGTGGTGCTGCGCCTTACATGGGGCACTAGATTCCAACATAAGTGCATCAGTCTTTTATTACTGGCCTGGTGATTCTTCTGAGTTCTGAAGTTTAAGGAGCTGATGCAATTGGCGTGTTTATAATGAAATGTTACTTACTACCATGATCAGAATATTTTAATTACCAAATGGAGTCCTGTTTTCGCCACCTACTTTTTCTTCTTTTCTTCCATTTCAAAATATTGTAGTATTTTGACTTAGTTTATCTTAAAAAACTGAATGGAACTGTTTTAGTACTGCGAATTGAAGTTTTATCCGGATTATGGGAAGTTTGGAATGCTGAACAAATTATGTTTTTAAATTATGTTTCTGTGGACCATTGTGTTCCTACTTGTTTCTCAAGTTGCTAGATACTTTTTATATTGTTATTAAATACCATTTCCACTTGTTTTTGATTGCTTTATTTATTTCTTTATGTCATTCTTCTTTAACAATTTATCATTGAAATGAAATTGCATAATTTGCCATGTGCTATTGGTTATCAATATCATCATCCTCTTGAAAAATTTAGTTAGATTAAAGCTAACTTATCATTTTTGTTATTAATAGTTTGTGTACTTAATCCTTTCAAGTTATTTTGCAGGTTTGATGGCCATATTTATGTAAACCATCCACCAATAATATAATCTGTTTAAATTAAAAAAGAAAAAAAAGTTTTTCTTTTAAGTTTGATCTTGACCTCCATCTGAAGTCCCCACATTTGAGAAATCATTTTTCTTGTAGGGTTCCTTAGCTAAGAATTTGATGTAGGTTTGCCTCCTTCCTTCCTTCCAAAAAGCATATGGGGTGCCCTATTATTTTAGGTGCTCAATTTTCTCTTCTAGAATTTAAAATCAAATTTTGCCATAGTCATGCTTATAAAAATGTCTTTATGGAGTATGTTAATTGTTGAAGATGGCTATTTGTTTTTTTGTTGGCCATTTTGATGATTCTCTGCTCAGCCATATTCGTATGGTCATGGTGTGCTTTCTTTATTGGGGTTTAAGTTTGCATTTTTTTATATGTTTCTCTACTTTTTCCTTTTTCAAAAGACTAATTATTCAGTTGCTTTCAAACAAATCTTTACCCTTATGTGGCATTTGATGCAC 2608 0.4513 MGRKRKIAPKSSQSAEPPLKHHQPEPESAHHEYDEVEEEVEEEEVEEEVEEEEDDEEEEDEEDEDDHQQDEDDDPISKLLEPLSKDQILILLCDAAAKHRDVADRIRKAADDDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVSNSQSQAQVPVPSVPTPSSSVSEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKQTGKPKGFCLFVYRSAESARRALEEPHKDFEGHILHCQKAIDGPKPGKLQQPHGNLSAPVQRAQFQRNDTGNASTAGYVGGAGTAQPGHLMAPAGPGLGFSQAAAAQAALNPALGQALTALLASQGTLGLTNLLGSIGTSGAVNPSSVPSAGASVQSGYSGQPNISPGVIGGYGNQVGLQVAYPNPNQQIGQGGSGRGQYGSGGAAPYMGH 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01447 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 293 IPR000504 GO:0003723
Pste5g01447 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 185 IPR000504 GO:0003723
Pste5g01447 470 Gene3D - 23 199 IPR012677 -
Pste5g01447 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Pste5g01447 470 FunFam UBP1-associated protein 2A 210 339 - -
Pste5g01447 470 SUPERFAMILY RNA-binding domain, RBD 203 317 IPR035979 GO:0003676
Pste5g01447 470 Coils Coil 33 66 - -
Pste5g01447 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Pste5g01447 470 FunFam UBP1-associated protein 2A 110 194 - -
Pste5g01447 470 Gene3D - 200 314 IPR012677 -
Pste5g01447 470 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 34 311 - -
Pste5g01447 470 MobiDBLite consensus disorder prediction 1 77 - -
Pste5g01447 470 MobiDBLite consensus disorder prediction 34 71 - -
Pste5g01447 470 SUPERFAMILY RNA-binding domain, RBD 116 197 IPR035979 GO:0003676
Pste5g01447 470 SMART rrm1_1 118 190 IPR000504 GO:0003723
Pste5g01447 470 SMART rrm1_1 225 297 IPR000504 GO:0003723
Pste5g01447 470 MobiDBLite consensus disorder prediction 443 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01447 Pste-Chr5 9247725 9253218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01447 223 319 C2H2 Transcription Factor Family AT2G19380 34.694 3.95e-10 60.1