Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01433 TGACATTCCCGGAGGCGCGCACAAAACCTAAGACACATGCGAATGAGTAACGTCAATTGAGAAGCAACAAGTGAGTAATAAGAAAAAGAAAAGAAAGAAATAAATTTTGAGAAATAAAAAAGGTATTATGTTTAAAAAGGAAGAGAAGGTGGAAGGTGGAAAAAAATCCCTTTGGTCCTTTAGATTGGCATTATTCGGATTTGGGAAGGAGAGACCTTATCTGTGGGTATTCGTGAATCGTGAATCGTGAATCGTGATTGGTGGCTGCTCTCTTGCTCCAAATATCAGAATTCAGAACTGTAAGTAATTCTCTCCTCTTTAACTCTCACCCACTTGTACTTTATATATGTCCCATCCCCCAATCCAAATGGACAACCACCACCACCACCACCACCGCCAATACCCTCCTGTGACGCCTTCAGCTTCAGGATTCGCGCGCCAAAACAAACCCTCCATAGTCAGAACCACCGCTCTCTCAGAAAGCCGCCGCTCACCGAGATTCCACCGCTGCTCGACAATTTCAACAACCATCTCTTCATGCCTTTCGATCACACTTTCCCCCTCGATTTCCTCTACTCGCCCCCTCCGCCCCGCCACTCCTCGCCCTCCGATTCCTCCCTCCCAACCCAACTTCGCTTCTTTTTCCAGTCACAACACCAGAGCCGCTGACCTAAGCGTCATGACCGCCGCCAGGGACTCCACCGTGGTCGATTCCTGCCACACGCCCGCCGAAGGATTCGTCGGTGCGCCAGCCCCTTCCACCACTGGCGCTGGGGGAAGAACCACAATGATGTGCGACCTTACAATGACATCATCTCCGGAAGCTTCCAGTAACAGCGACGAGCCGGTTCACGTGGCGCCGCCGGATGACCGGAAGCGGAAGGGACGGGAGGCCCACGAATGGGAGTGTCAGAGCGAGGGTAATCATGCAACTGGGGAAGGAGAAAGGTCTCAATATGAACTCTACTATAGTAATTCACGTTTGAAGATTATGATGAAGATTGGTTTGGATGTTGATTTTGAATTGGAAGCAAAGAAACAAGTTGGGGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTCCATAATCTTTCTGAGAGAAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGTTGTAATAAGTCGGACAAAGCTTCAATGCTAGACGAAGCAATTTCTTACTTGAAGTCATTGCAGTTACAAGTACAGATGATGTCCATGGGTTGTGGCATGATGCCTATGATGTTTCCAGGAATCCAGCAGTACATGCCAGCAATTGGAATGGGGGTTGGAATCGGTATGGGTATGGAAATGGGAATGAACAGACCTCTAATGCCATTTCCCAACATGTTATCGGGTTCAGCTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCAAGGTTTCCAATGCCCCCTTTCCACGTGCCAAATGTTCCTGTTCCCCACGATTCATCTAGATTGCAACCACCAAATCAGACAGATGATAATATGGTCACCTCAGCTGGTCCACCTGATCCAAATCAGTCACGTATCCCAAACTTCACTGATCCTTATCAACAATATCTTGGTTCCCACCAGATGCAGTTTCAATTAATTCCGGTTAGATTTTCCAGCACCATACTACAGCTGCAAAGGTTTGCGTTAAAGAAGCTTGTGAACTTCATCGCTATTATATATGGAGAGAAATTGAAGCAGTTCTTGATCTACATGACTCGGATGGTTCTATTGTTACGATGTGTTTTAGTGGTAGTGCATGGTTTCGCGTTCATGATGTATGGTGGGTACGACTCGGGGACCTTGCAATCTGGTAGATAA 1846 0.4729 MSHPPIQMDNHHHHHHRQYPPVTPSASGFARQNKPSIVRTTALSESRRSPRFHRCSTISTTISSCLSITLSPSISSTRPLRPATPRPPIPPSQPNFASFSSHNTRAADLSVMTAARDSTVVDSCHTPAEGFVGAPAPSTTGAGGRTTMMCDLTMTSSPEASSNSDEPVHVAPPDDRKRKGREAHEWECQSEGNHATGEGERSQYELYYSNSRLKIMMKIGLDVDFELEAKKQVGGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMMPMMFPGIQQYMPAIGMGVGIGMGMEMGMNRPLMPFPNMLSGSALPAATAAAHLGPRFPMPPFHVPNVPVPHDSSRLQPPNQTDDNMVTSAGPPDPNQSRIPNFTDPYQQYLGSHQMQFQLIPVRFSSTILQLQRFALKKLVNFIAIIYGEKLKQFLIYMTRMVLLLRCVLVVVHGFAFMMYGGYDSGTLQSGR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01433 499 MobiDBLite consensus disorder prediction 154 200 - -
Pste5g01433 499 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 241 309 IPR036638 GO:0046983
Pste5g01433 499 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Pste5g01433 499 MobiDBLite consensus disorder prediction 374 406 - -
Pste5g01433 499 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 156 425 IPR031066 -
Pste5g01433 499 MobiDBLite consensus disorder prediction 169 191 - -
Pste5g01433 499 MobiDBLite consensus disorder prediction 1 33 - -
Pste5g01433 499 Pfam Helix-loop-helix DNA-binding domain 247 293 IPR011598 GO:0046983
Pste5g01433 499 FunFam Basic helix-loop-helix transcription factor 238 301 - -
Pste5g01433 499 SMART finulus 249 298 IPR011598 GO:0046983
Pste5g01433 499 MobiDBLite consensus disorder prediction 379 406 - -
Pste5g01433 499 Gene3D - 238 301 IPR036638 GO:0046983
Pste5g01433 499 CDD bHLH_AtPIF_like 243 306 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01433 Pste-Chr5 9171229 9179062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01433 221 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G28800 43.216 9.92e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g01433 HLH 6e-13 No_clan