Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01360 TCTCAGTTCTCGACCTTCAATGCTTGCATCCCTAGCTTTCCTTCTCTAGTTTCTCTATTTTCTCAATCTTTTGGGGGCGGGTGGGAATAAAAATGTAACCTTTTTTTCTTAGTCTTTTTCGTATTTTGGATTTGATTCTGATGTACATGGGAGGGTGGTGGTGTTTGTTAATGTGGGTTGTCGTTGATTTTTGCTAAAACCTCTTCAAAGAGTTAGAAGTTGAACCTGATAGTACCAATTCTTTATGTAGGTTTATCTTTTAAGAGTGTATTTTTTTAAGAGACCCGTGCCTAGATAATGATGAGTAATGGGGAGCCTTTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAGGGTGGTTATGATGCTGTTTGTAAGAATAGGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGTGGAACTTGTTTACAGTAAGAACTTGTGTGCTTTAGAAACATGTTTGAAGAATGTTGCTGATGGTAAGTTTACTGAGTGTGGTTTAGTGGATGACAGAGTAAAGTTTCGCAAGCATTTGATGGAGAAGCAAGCTGAATTATTCTGCGACTGTCAGGATGGAAGGAAGTTGTGTGGTAGTAACAGAGTGAAGGGCATGAAACCGGAGTCAACTAGGGCTGAACTCAAGAGTGAAGGGCTTGTTGATTTGGATATGCTGGATCATCGGACAGATGAACCCATTATTGGAAACTTGTGCAGCCTTAATACTGGAAGGGATATGGTGGAAGAGTTTGATAGGGGGAAAATATTAACTGTGGATGCTTCCAATGCAGAAAGCAACAAGCCTAGATTGTCGGGTGGAAGCAAGAGCTGTGATAATGACAGCAATGACTATAGTGGATTTGGTCGTAAGAGGAAGAGAGAGTCCAAGTCAGAAATGCTAAGTTGGATTGCCAGCATTGCTAAAAATCCTTGTGATCCTGCCTTTGGTTCGATTCCTGACAAGTCTAAGTGGAAGTCTTACAGTAGTCAGGAAGTGTGGAAGCAGGTTTTGTTGTTTCGAGAAGCTATCTTTCTAAAGAAAGATTTTGAAACAATCAGTGAACAACTTAGTTGGCAGGGTCAGAAAATGCATCCTTCCATGTATGATGATCATGTTGGGTCGGTGTACAATCTTAGACAGAGGTTGAAATGTGACAAGAGAATGTTATTTGGAAATGCTACAACTGATGGAGTCTCCTCAGCTTCATCTGGAGGAACACCTGGTGGTTTGGAGAGAACCCCAAGTTCTCATGCTAAAGATCGTGCTGAGAAGCAGGTATCTGATTCCTGTACAGCACGATCAAGTCTTGATAGATGTGCCAGAGTGCACATCCCTTTGGGGCCAAACCATCAAGCCAAAGTGCCACAATGGACTGGCATGACCTATGATAGTGATTCTAAGTGGCTGGGGAGCCAAATATGGCCTCCTCTAAAAGCTGTAAATTCCAACCGTCTTCTTGAAAGGGAACCCATTGGAAAGGGAAGACAAGATTCATGTGGCTGCCAAGTACAAGGTTCTGTTGAGTGTGTCCGTTACCACATTTCTCAGAAAAGGTCCAAAGTTAAGTTGGAATTGGGTGAGGCGTTTTACCAATGGAATTTGCACAAGGTGGGTGAAGAAGTTAGGGTTTCCTGGACAGAGCAAGAAGAGAGGAAGTTTGAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCACCTTTTCAAAACATTTCCCAAGAAGAGCAGAGAAGATTTAGTAAGCTACTATTTCAATGTCTTTCTTTTGCAGCGAAGAGCATATCAGAATAGGCATACTCCGGACAACATTGACAGTGATGATGATGAATCAGAATTTACACCATTGAGGAAAGTTTTTGGACATCAAACACAGAAATCATGCAGCTTCAGCTTGCTATCCCCCAAAAAAGCCATCCACAAGGGATAAAAGCAAGTGAATATTAATTGAATGTGGAGCTTCATTGAAAATGTGAATTGACTATTTTGTGGGGTTGCACTGCTGCAATTTTCAGTATCAATGGATCTTTCTCTCCTTGTCCTTGCTTAGAATTTTAAATCACCATTGGTTTTTGGGGAGTAAAAAAAATGGAACTTTAAAAGATTGGTCTGGCTTTGTCAATTTAGGAGAAAGAAAGCATTCGGGAAGCAAACAACTATAAGACACTTAGAAGTTGGGGTTGCTTTTAGTTTACATGCTTCCATTTTTGAGACATGCCTTCTGTCTGTTGGCAGTGATATGTTGCAGCCGCAGGTACTCTAGTTCGTTTTATTTTCAATAGGTTTTGACAAGGTTTACTGAGTTGAAACAACAGCATCAGGA 2358 0.4109 MMSNGEPLDLYKLFMVVKEKGGYDAVCKNRLWDLVGEEYGLGVKVGSSVELVYSKNLCALETCLKNVADGKFTECGLVDDRVKFRKHLMEKQAELFCDCQDGRKLCGSNRVKGMKPESTRAELKSEGLVDLDMLDHRTDEPIIGNLCSLNTGRDMVEEFDRGKILTVDASNAESNKPRLSGGSKSCDNDSNDYSGFGRKRKRESKSEMLSWIASIAKNPCDPAFGSIPDKSKWKSYSSQEVWKQVLLFREAIFLKKDFETISEQLSWQGQKMHPSMYDDHVGSVYNLRQRLKCDKRMLFGNATTDGVSSASSGGTPGGLERTPSSHAKDRAEKQVSDSCTARSSLDRCARVHIPLGPNHQAKVPQWTGMTYDSDSKWLGSQIWPPLKAVNSNRLLEREPIGKGRQDSCGCQVQGSVECVRYHISQKRSKVKLELGEAFYQWNLHKVGEEVRVSWTEQEERKFEDVVKSNPASLDKCFWDHLFKTFPKKSREDLVSYYFNVFLLQRRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTQKSCSFSLLSPKKAIHKG 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01360 555 SMART sant 450 503 IPR001005 -
Pste5g01360 555 MobiDBLite consensus disorder prediction 173 201 - -
Pste5g01360 555 MobiDBLite consensus disorder prediction 173 192 - -
Pste5g01360 555 CDD SANT 453 501 IPR001005 -
Pste5g01360 555 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Pste5g01360 555 SMART ELM2_2 353 405 IPR000949 -
Pste5g01360 555 CDD ARID 4 57 - -
Pste5g01360 555 SMART bright_3 1 66 IPR001606 GO:0003677
Pste5g01360 555 MobiDBLite consensus disorder prediction 304 319 - -
Pste5g01360 555 SUPERFAMILY ARID-like 4 73 IPR036431 GO:0003677
Pste5g01360 555 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 550 - -
Pste5g01360 555 Gene3D - 1 73 IPR036431 GO:0003677
Pste5g01360 555 MobiDBLite consensus disorder prediction 304 336 - -
Pste5g01360 555 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01360 Pste-Chr5 8783894 8790694 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pste5g01360 ARID 1.6e-07 CL0123