Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01350 AATAAACCAAAGCCATAGCCACCTTCCTTAAACCCAATTCCTCGACAGTTTCTCACCCTTTCTTCATCTACGCTTTCCCTGAAAGATGTATAAAGTCTGGTGGCCTCTGATCTGACCCCCTCTTGAATTCAAATAACTGAAGAGAATGAAACTATCAATGATTGTTTTGATTAAATAACAAGAGTTAGTAGAAATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCCGCAAGGGGCACCAGTGTATTACTATTGCCCACCGAGTTTTGAAGAGCGTGAGTCTTTAACATCTAATGATGGTACAAATGCTTCTGTCAATGCTGGCTTTCTTGTTGGTTTGAACCTGGAAGCATCCATACCTGATACTTTCCAGCCCCCTCCTGTGCCTTTACCTTATGATATGGTCTTTGGAGGTTCTGCATCAACAGATTCTGAATCTGGCAGAGAAACTGTTAGTAGTTTTGAAACTTCAATTACACGTGAAGATGTTGAAGAATCAGATTGTAAAGCTCAAGCCAATTCTGCTCCTACATCTCCAAGGAAGGCACAACTACCAAAATCAAATCTAACTCATGTATTAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGAAATTTGACAAATTGTGAACACCATTTTCACCTATCATGCATTATTGAGTGGATGGAAAGAAGTGACTTCTGTCCTATATGTGATCAGAAAGCTATCTCTAAGGAAGCTGGCAAAAATACGTGAAAAAAAAACGGAAGAGTTGAATCAAACATGTACTAAGAGTAAATGCCATGATCATGCTAACTGCACTCAAACTGGGGTTGCGCTAATATGGGAATTAAAGAAAGGAGAAGGGTAAAAAATGTTTTCCCCTACCATTGGAAATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCTCAAATTAAAGTCATCGTTTTAGTATCCTTTGGTGATGAGATTTTGACAGAAAGCTACACCATATGACAAGGCATATCTCTCTACAAATGCAATTTCTTTGGTCAAAATTTGCCGTAGTGAAAACAATGCAGCAATTCTCTAGATGCCAACATTCATGTTTGCTGATTTCTTTTTCTTGTGCTGATTTACTGTTCTCCATTCTCATGTAAAAATTTGCCCTTTTTTTGGGGGTGGGGGGAAGGGATTCATAATGGTGGTCATGCCTTATTTACATTTTCATTGTATATATTTATTCTGGTAGATTATAGGGTTAAGTGTTTTTGCTGTATTTGCAATGAGTAATTATCAAGTATACAATAACACCCTATTTCTATTAAATTTTCATCACTCCTTTCTTTTCCATTAAT 1356 0.3717 MGGCCCSARKPHPQGAPVYYYCPPSFEERESLTSNDGTNASVNAGFLVGLNLEASIPDTFQPPPVPLPYDMVFGGSASTDSESGRETVSSFETSITREDVEESDCKAQANSAPTSPRKAQLPKSNLTHVLVTEEEDVCPICLEEYDVENPRNLTNCEHHFHLSCIIEWMERSDFCPICDQKAISKEAGKNT 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01350 191 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Pste5g01350 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 183 - -
Pste5g01350 191 MobiDBLite consensus disorder prediction 76 94 - -
Pste5g01350 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 188 IPR013083 -
Pste5g01350 191 SMART ring_2 138 178 IPR001841 -
Pste5g01350 191 MobiDBLite consensus disorder prediction 107 121 - -
Pste5g01350 191 MobiDBLite consensus disorder prediction 74 121 - -
Pste5g01350 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 114 183 - -
Pste5g01350 191 Pfam Ring finger domain 137 178 IPR001841 -
Pste5g01350 191 SUPERFAMILY RING/U-box 131 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01350 Pste-Chr5 8734811 8739009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01350 1 183 C3H Transcription Factor Family AT4G00335 56.757 1.61e-69 208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01350 5 8734811 8739009 Pste5g01350 5 8734811 8739009 ECH
Pste5g01350 5 8734811 8739009 Pste6g02054 6 9639852 9643999 PCT