Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01335 GAGAGAGAGAGAGAGAGAGAGAGAGATGGCGATGGAGGGAGAGAGGCGCGTGTGGGTCTGGGGACGAGTCAGAGGAGGAGTTTGACCCGGTGGAGGATATCCATCGAATCATTGAATCCATGGTTCAAATCGGCGACTACAGGAAGACACAGAGGAGGGAAAGCCACAATCTCGTGCGTCGTTTCAAGCTCATGCTGCCCCTCTTGGAAGAGCTTCGCGATCTCCCACAACCCTTCCCCCAATGCGGCATTGTTTGGTTGACTAAACTCAAGAACGCGCTTTTGTCCGCCAAGGACTTGTTGATATTGTGCAGCCAAGGAAGCAAGATTCAACTTGTTATGGAGATGGAGGGAGTTATGATCTCGTTTCAGAAAGTGTATGACATGTTAAGCCAAGCCTTTGATGGTGTGCCTTGTAATGAATTGGGTATCTCGGATGAAGTCAAAGAACAGCTTGAGCTAATGTACGTGCAACTTAGGCGAGCTAGGAGAAGAAATGATACACAAGATATGGAACTTGCAATGGATATGATGGTGGTGTTCTCTAATGATGATGACAGAAATGTTGATAGTGCTATCATTGAGAGGCTGGCAACAAAGCTGGAACTTCGTACTGTTGAGGATCTTAATATAGAAACGATGGCTATTAGGAGCCTTGCTGTAGAAAGAAAAGGGCAACAATCTGAGAGCGTTCAGCGAATAATTGAACTTCTTAACAAATTCAAACGAATTTCAGGCATGGAAGAAACTACTGTCCTTGAGGATCCAGCCATGCCCAAGACGCTTGTGAGGTGCACCTCTTTGGTCATCCCTTATGAGTTTCTCTGCCCAATAACACTAGAAATCATGGCAGATCCTACATATGAAAGGGAAAGCATAGAGAACTGGTTCAAATCCAATCATAACACATGCCCAAAGACTAGGCAACCTTTGGAACACCTGTCATTGGCACCAAATCGTGCCTTGAAAAGCTTGATTGAAGAATGGTGTGAGAAGAACAAATTCAAACTTCCTAAAAGGTATACTTCTTCAGGTCAGGAAAGCGGTCCCATAGACAGCAGAGAGCAAATTCCAGGTTTAGTTGAGAGCCTATCGTCTTTTCATTTAGAAGAGCAGAGAAAAGCAGTGGAGAAGATACGTATGATATCAAAAGAAAATCCTGAGAATAGGGTTTTGGTTGCTGAACTTGGAGGAATACCACCACTAGTGCAACTCCTGTCCTATCCAGATCCAAAAATACAGGAGCATGCTGTGACAGCAATTTTGAATTTATCAATTGATGAGGGTAATAAGAGACTTATATCCAACGAAGGTGCCATTCCAGCTATCATAGACGTTTTGGAGAATGGGAGTTGTGTTGCCAAGGAAAACTCAGCAGCAGCTTTATTCAGCTTGTCAATGCTAGATGAGATTAAAGAGATAATAGGGCAATCAAATGGGTTTTCCCCTTTGGTAGATTTGTTAAGAAATGGAACAGTTAGAGGGAAGAAAGATGCTGCTACAGCTCTTTTTAACTTATCTATTAGCCAAGCAAATAAAGGTAGGGCTATTAGAGCTGGCATTGTGAAACCCTTACTTCAATTGCTCAAGGATAAAAACTTGGGCATGGTTGATGAAGCGCTTTCCATTCTTTTACTCCTTGTATCAAATTCAGAAGCAAGGCAAGAGATTGGACAACTTACTTTCATTGAAACCCTTGTTGAGTTCATGAGAGAAGGGACTCCCAAGAACAAGGAATGTGCAACATCTGTTCTTCTTGAGTTGTGTGCAAATAACTCGTCCTTTATATTGGCAGCACTTCAGTTTGGGGTGTACGAGTATTTAATGGAGATAAAACAGAATGGAACAAATAGAGCGCAGAGGAAAGCAATTGCAATCATAGATCTAATAAGCAGGAGCGAGCAAATTTAA 1910 0.4272 MVQIGDYRKTQRRESHNLVRRFKLMLPLLEELRDLPQPFPQCGIVWLTKLKNALLSAKDLLILCSQGSKIQLVMEMEGVMISFQKVYDMLSQAFDGVPCNELGISDEVKEQLELMYVQLRRARRRNDTQDMELAMDMMVVFSNDDDRNVDSAIIERLATKLELRTVEDLNIETMAIRSLAVERKGQQSESVQRIIELLNKFKRISGMEETTVLEDPAMPKTLVRCTSLVIPYEFLCPITLEIMADPTYERESIENWFKSNHNTCPKTRQPLEHLSLAPNRALKSLIEEWCEKNKFKLPKRYTSSGQESGPIDSREQIPGLVESLSSFHLEEQRKAVEKIRMISKENPENRVLVAELGGIPPLVQLLSYPDPKIQEHAVTAILNLSIDEGNKRLISNEGAIPAIIDVLENGSCVAKENSAAALFSLSMLDEIKEIIGQSNGFSPLVDLLRNGTVRGKKDAATALFNLSISQANKGRAIRAGIVKPLLQLLKDKNLGMVDEALSILLLLVSNSEARQEIGQLTFIETLVEFMREGTPKNKECATSVLLELCANNSSFILAALQFGVYEYLMEIKQNGTNRAQRKAIAIIDLISRSEQI 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01335 596 Coils Coil 105 125 - -
Pste5g01335 596 CDD RING-Ubox_PUB 231 276 IPR045210 -
Pste5g01335 596 Pfam U-box domain 230 294 IPR003613 GO:0004842|GO:0016567
Pste5g01335 596 SMART Ubox_2 233 289 IPR003613 GO:0004842|GO:0016567
Pste5g01335 596 SUPERFAMILY ARM repeat 316 591 IPR016024 -
Pste5g01335 596 ProSiteProfiles U-box domain profile. 229 296 IPR003613 GO:0004842|GO:0016567
Pste5g01335 596 SUPERFAMILY RING/U-box 230 299 - -
Pste5g01335 596 Gene3D - 297 595 IPR011989 -
Pste5g01335 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 296 IPR013083 -
Pste5g01335 596 Pfam Armadillo/beta-catenin-like repeat 430 467 IPR000225 GO:0005515
Pste5g01335 596 Pfam Armadillo/beta-catenin-like repeat 346 385 IPR000225 GO:0005515
Pste5g01335 596 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 357 399 IPR000225 GO:0005515
Pste5g01335 596 FunFam RING-type E3 ubiquitin transferase 1 100 - -
Pste5g01335 596 PANTHER U BOX DOMAIN-CONTAINING 12 590 - -
Pste5g01335 596 FunFam RING-type E3 ubiquitin transferase 301 596 - -
Pste5g01335 596 SMART arm_5 346 386 IPR000225 GO:0005515
Pste5g01335 596 SMART arm_5 469 509 IPR000225 GO:0005515
Pste5g01335 596 SMART arm_5 510 550 IPR000225 GO:0005515
Pste5g01335 596 SMART arm_5 428 468 IPR000225 GO:0005515
Pste5g01335 596 SMART arm_5 387 427 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01335 Pste-Chr5 8627820 8631463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01335 3 596 U-box Gene Family AT5G42340 61.730 0.0 699