Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01292 GAAAGAGGGAGAGGTGGAGTGAGTTTAAATAGCGGCGGGGTTTGACAGTGAGTGGAGTGGAAAGGTTTGGGTGATGATGGATTGGGAATCGGACGACAGAGTCCTGACGGGGTACGTGAATGCGAACATCGTGGGGATGCAGCACCAGCAGGGCAGGATGGAGGGCCAGAAGGTTCTATTGGGCCTTCTCCGCGAGCCCAACAACTCCCACGACCCGAACGCCATCCAGGTCTTGAACACCCACTCCCTCCCAGTGGGCTACATCGACCGCGCCGTCGCCAAATCCCTCTCCCCCCTCCTTGACGCCGACCTCGTCACTGTGGAAATCCTCATCCCCTCCTCCAAGTCCCGCCCCTACCAACGCCTTCAACCCTGCCAACTCCACCTCTTCGTCCGCCTTCGCCACCTTGACGCCTTCCATGCCTCCGTCAATGACCTCTCCCTCAATCTCATCACCCCCTCCCACTCCTCCTTCACCCTCTCTGACTCCGCCGCCGTCAAAGAAACCCAGGCTCAGAAGAAGTCCTTCTCCATCGACGCCGCTTTCGCCTCCCTCTCCCGCTCTCTCTCTTCCAACCAAGCTTTCATCACTCTCCTTGAGCCTCCCCGCTCCATCATCAAATCCGATCTTCTTCCTCACCAGAAGGAGGCCCTCGCCTGGCTCGTTCATCGCGAAAAACCCGATCAGTTGCCTCCCTTTTGGGAACTCTCCGATGGTCGTTTCGTCAATATCTTGACCCATTTTCAAAATGTCTCTAGCCCTCGCCCTTTGCGCGGTGGCATTTTCGCCGACGACATGGGCTTGGGAAAGACTTTAACTTTGCTTTCTCTTATTGCTTTTGACAAAAAAACCCTAATGGGTGTCTCTAAGAAATGGAGAACCGATAGAAAGTTTCTTCCTTTCGAGAACCTTCGCAAGAATGATTGTGAGACCTCCCTTTGCTCTGGAATGAGAACCAATGCCACTTTGGTCGTCTGTCCTCCTTCTGTTATGTCTACTTGGATAACCCAATTGGAGGAACACGCTGTGCCTGGTGCCTTGAAGACTTACATGTATTATGGGGAAAGAAGGACCAAGAATGTTGAGGACCTTAAGATGTATGATTTGGTGTTGACTACTTACTCTACTCTCTCTAATGAACGCCTCATGCCCGACATGCCCGCCAAGAAAATGGAGTGGCGGAGAATTGTCTTGGATGAGGCACATTCCATCAAGAATTTCAATGCTCTACAGACTTCCGCGGTTTTCAAGTTGAATGGTCAGTGCCTTTGGGCAGTCACAGGGACACCCATTCAAAGTGGTTTTATTGATTTGTTTTCTATCATGGTCTTTTTGCGCTTTGAACCATTTTCTGAGAGAAGATATTGGAGAGAATTGGTTCAACGCCCTCTTAATCAGGGCAAAGAGAATGGGCTCCTACGCTTGCAGGTTTTGATGGATGCAATTGCTTTGCGAAGAACAAAAGATATCGCATTGGTGGGGCTGCCACCAAAAACCATTGAGATTTGTTATGTTGATCTTTCTCTGGAAGAACGACAACTGTATGATCAGACGAAAGAGGAAACAAAGACATGGTTTCATGGTTTTGGCTATGAGGAAGTTATAGCATCCCATTATTCTGCTGTACTAAGTAGGATTCTAAGACTTCGCCAGATCTGTACTGATTGGAAATTGTGTACACATCAGTCACAACTCCTTAAAAATATAGAAGATGTTTCCAATAACCCTGAATTGCTGCAAACATTACTCGGTGTGCTGCAAGATGGTGAAGATTTTGACTGTCCAATTTGTTTATCTCCTCCAACGGATATTGTCATCACATGCTGTGCTCACATTTTCTGCCGAGAGTGTATTCTAAGATCCCTACAAAAGAGCAACCAACGTTGTCCTCTTTGCCGGAATGAACTTTCAGAATCTGACTTGTTCTCAGCCCCTCCTGAGTGTTCTAAGACAAATAGTGCTGAAATGTGCTTGTCGTCAGAAACAGAGTTATCTTCTAAGGTGCTTACACTGATCAAGCTTCTAATCGAATCAAGGAAACAACATCCAGCTGCAAAGTCAGTTGTATTTTCACAATTCCGAAAGCTGTTGTTGTTAATGGAACAGCCTCTGATTGCAGCTGGTTTCAAGACTTTGCGTCTTGATGGAACAATGAATGCTAAACACAGGGCCAGTGTTATTGAGAAGTTTCAAGTCCAAGGAAGAGATGGACCAACAGTTCTGCTTGCAAGCCTCAGGTCTTCAAGTGCAGGTATAAATCTCACATCTGCCTCCAGAGTCTACTTTATGGAGCCATGGTGGAACCATGCAGTAGAGGAACAAGCAATGGATCGTGTACACCGCATTGGACAGAAAGAGGCTGTGAAGGTTGTCCGATTGATTGCTAAAAACAGCATTGAAGAGAAAATACTGATATTGCAGGAGAAGAAGAAACAAATTTCCAGGGGAGCATCTGGGGTGGTAATAAACGGCATGGAAATGAAAGATATACGTTTCCTTTTAGATTAGTGATGGTAACTAGTTACATGGGTGATCCTCAATGTTTTGCTGACTCCCTATAATTTTGTTTGACTAAAACCACAAAGGGAGGACGACTGTTTTTTGATGATATACAAAATTAACTTGTAAAGTCGTTGGATCTGATGAGGTCCATTTTTTATTATATAGATTACTGTGAAAATTTTCATTTTTTATGGTATAAAGGAGGATTGTAA 2715 0.4608 MMDWESDDRVLTGYVNANIVGMQHQQGRMEGQKVLLGLLREPNNSHDPNAIQVLNTHSLPVGYIDRAVAKSLSPLLDADLVTVEILIPSSKSRPYQRLQPCQLHLFVRLRHLDAFHASVNDLSLNLITPSHSSFTLSDSAAVKETQAQKKSFSIDAAFASLSRSLSSNQAFITLLEPPRSIIKSDLLPHQKEALAWLVHREKPDQLPPFWELSDGRFVNILTHFQNVSSPRPLRGGIFADDMGLGKTLTLLSLIAFDKKTLMGVSKKWRTDRKFLPFENLRKNDCETSLCSGMRTNATLVVCPPSVMSTWITQLEEHAVPGALKTYMYYGERRTKNVEDLKMYDLVLTTYSTLSNERLMPDMPAKKMEWRRIVLDEAHSIKNFNALQTSAVFKLNGQCLWAVTGTPIQSGFIDLFSIMVFLRFEPFSERRYWRELVQRPLNQGKENGLLRLQVLMDAIALRRTKDIALVGLPPKTIEICYVDLSLEERQLYDQTKEETKTWFHGFGYEEVIASHYSAVLSRILRLRQICTDWKLCTHQSQLLKNIEDVSNNPELLQTLLGVLQDGEDFDCPICLSPPTDIVITCCAHIFCRECILRSLQKSNQRCPLCRNELSESDLFSAPPECSKTNSAEMCLSSETELSSKVLTLIKLLIESRKQHPAAKSVVFSQFRKLLLLMEQPLIAAGFKTLRLDGTMNAKHRASVIEKFQVQGRDGPTVLLASLRSSSAGINLTSASRVYFMEPWWNHAVEEQAMDRVHRIGQKEAVKVVRLIAKNSIEEKILILQEKKKQISRGASGVVINGMEMKDIRFLLD 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01292 811 Gene3D - 4 122 - -
Pste5g01292 811 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 138 810 - -
Pste5g01292 811 CDD SF2_C_SNF 637 770 - -
Pste5g01292 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 620 IPR013083 -
Pste5g01292 811 SMART ring_2 570 608 IPR001841 -
Pste5g01292 811 SMART ultradead3 182 436 IPR014001 -
Pste5g01292 811 Pfam Helicase conserved C-terminal domain 643 759 IPR001650 -
Pste5g01292 811 Gene3D - 472 806 IPR027417 -
Pste5g01292 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 805 IPR027417 -
Pste5g01292 811 CDD RING-HC_HLTF 565 617 - -
Pste5g01292 811 SMART helicmild6 674 759 IPR001650 -
Pste5g01292 811 SMART HIRAN_2 12 109 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pste5g01292 811 ProSitePatterns Zinc finger RING-type signature. 585 594 IPR017907 -
Pste5g01292 811 Gene3D - 221 463 IPR038718 -
Pste5g01292 811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 646 804 IPR001650 -
Pste5g01292 811 Pfam HIRAN domain 13 93 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pste5g01292 811 Pfam SNF2-related domain 189 532 IPR000330 GO:0005524|GO:0140658
Pste5g01292 811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 424 IPR014001 -
Pste5g01292 811 SUPERFAMILY RING/U-box 566 618 - -
Pste5g01292 811 Pfam Zinc finger, C3HC4 type (RING finger) 570 608 - -
Pste5g01292 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 462 IPR027417 -
Pste5g01292 811 ProSiteProfiles Zinc finger RING-type profile. 570 609 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01292 Pste-Chr5 8337512 8341868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01292 11 793 RAD5 or RAD16-like Gene Family AT5G05130 52.055 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste5g01292 SNF2_N 1.4e-67 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01292 5 8337512 8341868 Pste5g01292 5 8337512 8341868 ECH