LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g01289	CTCTCTATAGCAAAAGTCAGCGCCTTCTTTTGTCTTTTGTCTCTCACTCTGCAGAGTTTGTCTCTATGGCGGAAGATTGGGATCTACATGCGGTGGTTAGAGGTTGTTCCATGGTTACATCATCCTCTGTTTCTTCCTCCTCCTCTTCCTCTGGCTTTGCCTCTTGTTACTTCCAACCTGAAGCTGTTTCTTCTTCCTCTTCCTCTTCTGGCTTCTCCATCTTTAAGGGTCAACAGCCAACCCAAGTTTTGTCGCTTTCTGCTTATCCTTTTGAGGGAAGGAGCTCCATTGAGGAGTTGCATGAGCTTTGCAAGCCTTTCTTTCTCAAATCTCAGCCTCTCTCGTTGCAAGCCTCTTCACCCTTGTCCTCACTCTCTTCCTATTCCTCTGCGCCTCCTAAATCCGTTGCAACGCAAGATAAGCAGCAACAGCGGAGTAAGCACCCGCATGCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAACTTAAGAAAGTGTGTCAAGTGCCAGTTGAGAATCTATCCTCGGACATATGGGCATGGAGGAAATACGGACAGAAACCCATAAAGGGGTCTCCTTATCCAAGGGGATATTATAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAAGTTGAGAGGAACAGATCAGACCCAACAATGTTTATAGTGACTTATACTGCTGAGCACAACCACCCTGCTCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGCCAGAAACCGTTGGCACCCCAAATTGCCACCACTGGAGAAGAATCTGACAGGAGCAAGAGCCTCACAAGAGCCACTTCCCCTGCCACCTCTCGGGCAGAGGAAGAGGTTCCAACACAAGCGGAGAATTCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGATGAGGAAGAAGATGAATTTGGGTTGTCTGATATGGTGCTAACAGATGACTTCTTTGAAAGTTTGGATGAACTGAGTCAACTCACCGCCCCTTCTATTGTCACTGGAGATTGTTTCAATGACCCCTTTTCAGCTATTGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCTGGTGGATGTAGATGATTCTTTTGGGGGAAATCATCGCAACAAGTGATCATTTTTCATGCTTTTCATTGATGATCATAGGGACCTTTTTTTTTTTTGTTTGTAGAGGAAATGAATCATTTTGGAGGAATCTTTACTAACAAGGGCTTGTGAAGGGAGGGGGGGAGTTTTCCATAGTAGATTGGTGACTAGTAAGGTAGATCAAGCATTGATATGGTTAAAATTAATGGTTATTAGGCATTCGTAGTTTTCTGTCATACTATGTTAATGTAAAAACAATTTATTTTATCAGATTTTGTATGCTCCTTGAGTTGTTGAGTTCATTGTATTATTCAACATTGGTTGTGATATAAATTGGCAAAGCAC	1445	0.4429	MAEDWDLHAVVRGCSMVTSSSVSSSSSSSGFASCYFQPEAVSSSSSSSGFSIFKGQQPTQVLSLSAYPFEGRSSIEELHELCKPFFLKSQPLSLQASSPLSSLSSYSSAPPKSVATQDKQQQRSKHPHAVTTPRSKRRKNQLKKVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQIATTGEESDRSKSLTRATSPATSRAEEEVPTQAENSESREEKEDVMDDEEEDEFGLSDMVLTDDFFESLDELSQLTAPSIVTGDCFNDPFSAIAIPSWVASGAATAGGCR	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g01289	343	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	4	308	IPR044810	GO:0003700
	Pste5g01289	343	MobiDBLite	consensus disorder prediction	103	145	-	-
	Pste5g01289	343	MobiDBLite	consensus disorder prediction	209	286	-	-
	Pste5g01289	343	SMART	WRKY_cls	154	214	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01289	343	MobiDBLite	consensus disorder prediction	103	118	-	-
	Pste5g01289	343	Gene3D	WRKY domain	138	208	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01289	343	ProSiteProfiles	WRKY domain profile.	149	215	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01289	343	MobiDBLite	consensus disorder prediction	129	143	-	-
	Pste5g01289	343	MobiDBLite	consensus disorder prediction	212	262	-	-
	Pste5g01289	343	SUPERFAMILY	WRKY DNA-binding domain	152	215	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01289	343	Pfam	WRKY DNA -binding domain	156	213	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01289	343	FunFam	WRKY transcription factor 22	138	208	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g01289	Pste-Chr5	8295081	8297038	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g01289	1	341	WRKY Transcription Factor Family	AT4G01250	46.910	1.95e-83	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste5g01289		WRKY	3.3e-25	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g01289	5	8295081	8297038	Pste4g02823	4	19849757	19851548	ECH
	Pste5g01289	5	8295081	8297038	Pste5g01289	5	8295081	8297038	ECH
	Pste6g01976	6	9161724	9163741	Pste5g01289	5	8295081	8297038	ECH
	Pste6g00804	6	3090607	3095432	Pste5g01289	5	8295081	8297038	ECH
	Pste5g01289	5	8295081	8297038	Pste6g01976	6	9161724	9163741	PCT