Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01286 ATGGGCCTCAGAGACATTGGTGCTTCGCTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAAGAAGTTCTGAAGGGTACCTTGGTAGAAATTGACCTCCACATATGTGAACCGTGGCAACTTCCTGAGGTGGCTAAGCTGAATGCAAATGAGTGGTACTTCTTCAGCTTCAGGGACCGCAAATACGCGACAGGGTTTCGAACCAACCGGGCAACAACATCAGGGTATTGGAAAGCAACGGGGAAGGATCGTACGGTGCTGGATCCATCCACGCAAGAGGTCGTAGGGATGAGGAAAACACTGGTGTTCTACAGGAACAGGGCCCCAAATGGCATCAAAACCGGTTGGATCATGCACGAGTTCCGCTTGGAGACCCCACATATGCCTCCAAAGGAGGACTGGGTGTTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATTCCAAAGTGGTGTATGAGACAAGTGCTTCTTCCCTAACTTTGGCTTCGTCATCTCCAACCAACCATGCCATGCCTGTTGGGTATAACAGACTTCCCACTTCCATCTCCATGCCAACCCACCATCATCATCATCATCTCAACCCAAACCCAAACCAAAACGCTTCTTCTTTCATGGATCTCCTTCACTTCTCTAGGCAAACCAACACCAAAGCTGATGATGCCTACGCTTTCTTATGGGATATGGACCTACATGAAAATAACCTAGAGCCTGCTGTTGCTTCTAACTTGGACACAATTACATTCCAGGTTGATAATAATCATGATGATAATATGGTCTTGCTATAAGGATAATATTATGCTTCTGCTTCATATACATCTCAACATTCGTTTATTTCTCATGTATTTATGGTGTTTCTCTGTGAGGGGCCTACATTATTATTGGGATCAATTGTTACAACTTTGTGTGGTATATATATTGTTCAAGAAGTAGTAGGGAAATATTATAGGGTTTGGGAACTATTATTTACACCTTTGTACACAATACAGCTTGTCC 1033 0.4424 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPSTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDSKVVYETSASSLTLASSSPTNHAMPVGYNRLPTSISMPTHHHHHHLNPNPNQNASSFMDLLHFSRQTNTKADDAYAFLWDMDLHENNLEPAVASNLDTITFQVDNNHDDNMVLL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01286 274 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 214 - -
Pste5g01286 274 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Pste5g01286 274 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Pste5g01286 274 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Pste5g01286 274 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01286 Pste-Chr5 8265380 8272953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01286 6 202 NAC Transcription Factor Family AT1G56010 50.000 1.16e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste5g01286 NAM 2e-37 No_clan