LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g01282	ATGGAAACACCAAACCCTCCATTAGTCCCGCCACCCCAAAACAACCCTTTCCTCTTCACGCCTTCGGTGTTGCAAACTTACCCTTTGCACCCTCAAGACGACTGGGGTACCCTTAACCTTTTCTCTCCCCAAAACAACTTGTTGCTTACTGGGGATTCCAAGGACACTGTCCAATGTCCTTCTTCTTCTTCAACTTCCTTTGTGCCTCAAAGTAAGGGAGCTTCTGAGGAGGAGAATAGGAAAAGGGCCAGGATGAAAAAAACAACACGTGTACCAAGGTTTGCATTCCAAACCAGAAGTGCTGATGATATTTTAGACGATGGTTATCGTTGGAGGAAATATGGCCAAAAAGCTGTCAAGAATAGCACCTATCCCAGAAGCTACTATCGCTGCACGCATCACACATGCAATGTGAAGAAACAAGTGCAAAGGCTATCCAAAGACACAAGCATAGTGGTGACAACTTACGAGGGAATTCACAATCACCCATGCGAGAAGCTCATGGAAACTCTAACCCCTCTTCTGAAGCAAATACAGTTTCTTGCAAGCTTGTAATAACGTCAAACTGTTCCTCGGCTACATGCATATAATGCACATAAATATCAAGAACTCGAATTAAGTTAACTTATTT	631	0.4374	METPNPPLVPPPQNNPFLFTPSVLQTYPLHPQDDWGTLNLFSPQNNLLLTGDSKDTVQCPSSSSTSFVPQSKGASEEENRKRARMKKTTRVPRFAFQTRSADDILDDGYRWRKYGQKAVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLASL	184

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g01282	184	SUPERFAMILY	WRKY DNA-binding domain	98	164	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01282	184	Pfam	WRKY DNA -binding domain	106	163	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01282	184	Gene3D	WRKY domain	90	164	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01282	184	FunFam	WRKY transcription factor 57	91	165	-	-
	Pste5g01282	184	SMART	WRKY_cls	105	164	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01282	184	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	53	166	IPR044810	GO:0003700
	Pste5g01282	184	MobiDBLite	consensus disorder prediction	52	73	-	-
	Pste5g01282	184	ProSiteProfiles	WRKY domain profile.	100	165	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01282	184	MobiDBLite	consensus disorder prediction	52	88	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g01282	Pste-Chr5	8243861	8244871	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g01282	78	184	WRKY Transcription Factor Family	AT5G41570	71.963	1.83e-57	177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste5g01282		WRKY	1.9e-25	CL0274