Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01278 GACTCTAATTTAGATGCTGTGTTTAAACTGCCTATGTTCTTGTATGATATGTATGGCAATTTGTCACTTTGGCTCAGGGTTGTTGGATATCTCAGATACTTGATGGAATTAGGTGATCTTCCTTTAAATGCTGGTCATCTAAAAGGGACCATACAAGGATATCCAAACTGCAGTAATTGTCTGAAGGTAACAGCAAGGTGGCATGCTGAGAATGCAACAAGAGAAGTTTTGGAAGAAGCTCCTGCTTTCCACCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATATGTTCCAGAGCAGAATCTTTTGGTATTTGCCGTATTGTCCCTCCTACTTGCTGGAAACCACCATGCTTTCTTGAGAAAAAGGACATATGGGAAGATTCTGAATTTGTTACTCAGATTAAGCGAATTGATGGACACCAAGTTCAGCATGCACAAAAAGTTACGGCTAGGACTCCTGAAAATAAAAAAACCAAGAGAAAAAGAGATGTAAAAGCAGCTTTGGACTCTCAGCTTGGTAATAGAACCACCAACATTCCAAATAACCAGAATGTTGAAAAATGTGACTGTGAATCTGAACCTGGTCCTAAATTCTGTCTCAAAACATTTAAGCAATATGCGGATGTATTTAAGAGCGAGTACTTCAATTACAAGGATAATAAGAAGATTATTGGTTCCGATATAAAGTTAGCTATACATCAGCAATGGGAACCATCTGTGGAGAATATCGAGGGTGAATATGGCCGGATTGTTCAAAATCCAACTGAAGAAATTAAGGTGCTTTGTGGTAACACATTGGAGGCTGGATTTTTTAGAAGTGGATTTCCAACAGATTCTGATCCTGTGGAGACATGCACTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATACTTTCACTGTCAGGTTCCCTTCTTTCATTTGAAAGCTCTGAAGATTCACGTAATTTTGCCCCCAAGATTCATGTGGGAATGTGCTTCTGTCCCCACAACTGGAAAGTTGAAGAGCACCACTTATACTCATTATCTTATGTGCATTTGGGTGAACCAAAAGTGTGGTATGGCATCCCAGGAAGATTTTCTGTTAACTTCGAAACAATTTGGAAGAAGTATCTCCCAGATTTGCAGGCAGGACCACCTGATATGCCTGATAATATGGTGACGCAGTTATCATGCTCTGTAGTGAAGGCTGAGGGTATACCGGTATATCGTTGTGTTCAATATCCTCGGGAGTTTGTTCTTGTCTTCCCCGGGGCATATCATTCAGGAGTTGATTGTGGCTTCAACTGTTCTGAAGCTGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAATGTTGTAGAACTATATTGTGAACAGAGGAGAAAGACATTACTTTCATATGATAAGCTTTTGTTAGGAGCAGCAATGGAATCTGTGAGGGTTCAATGGGAAACTAGTCTTTCCATGAAGAGCACATCATCGGACAGCTTAACATGTAAAGATATATACCGGAAAAATGGGTTCTTAACAAAAGCTTTGAAATCTCGCATCCAGAGTGAAAGTTTGAAGAGGAAATTTCTTTGCAATTCTTTGGTGTCACGAAGAATGGTTGAAAATTTTGATTCCTCTTGTAAAACGGAATGTACTATTTGCCTGCGTGATTTACACTTGTCTGCTGTAGGGTGTTCATGTTCAGATGACAAGTTTGCGTGTCTTGATCATGCAAAGCAGTTTTGTTCTTGCACTTGGAGCAACAAAATTCTCTTCTACCGTTATGAAATCATTGATTTGAATGTTCTTTGCCAAGCTGTGGAAGGAAAACTAAGTGCAGTCTTTAAATGGGCCAAAGAATATCTCGGACTAACTGTGAACTCGATTACCTCGACAAGATCAAAACAAAGTGAAGAAAACGTTAATGGTTCAACCTGCTCTTCGCAAAACTTGCAGACGAAAGAACCTATCTCCCAGACTGAATTAGATGAATCCGCAAAGGGAAAACAACGTCAACTACAGGAACTATTGAATCCAACAAAAAAGAAAAAAAATGGAGTGGTTCCAAATTCGTCAAAGAAACAACATAAAGTGGTTCTAAAATCATCAAAGAAGAAAATAAATGCAGTGGTTTCCCAAGTCATGCGGACTTCTGGTGGCAGTTCTCGCGTCATTCATTCAAAAACGAAGACTCTTGGGCGTAAATTTACAATTTCAAAGAAAGCAGATCCTAAAGTATCTATAGCTCCTTCAGTTACAGACTCGCGGTACTTGTCTTTTCTAGAAGAACATGTCTTAGTTGATGTTTCATCTGATAGTACAAGCACATCTATGTCGTCAGATTCTGAATATTCTTGAGTAGCTAATTGCCAAATTTTTCAGTGGAAAGATATAGGAGTCCTTTATAGGTTTAAGTATGCAGGATAACCATTTATTCATGCAGAGATATTGACACACTGAAAATTTGGATAATACATCCATCGTAGTATATGGATATATAGTTGTTCAAGTACCAGGTTGGGTTCTAACCCGATAGTTGACTACCAACACTATTTTGGCAAGTAGACAAAACGGCATATCCATTGGTTCATTTTGTATCTTGAGTTTTTCTAATGTCATGCTTGTCTCTTTCTC 2634 0.3872 DSNLDAVFKLPMFLYDMYGNLSLWLRVVGYLRYLMELGDLPLNAGHLKGTIQGYPNCSNCLKVTARWHAENATREVLEEAPAFHPTEEEFKDTLKYIASICSRAESFGICRIVPPTCWKPPCFLEKKDIWEDSEFVTQIKRIDGHQVQHAQKVTARTPENKKTKRKRDVKAALDSQLGNRTTNIPNNQNVEKCDCESEPGPKFCLKTFKQYADVFKSEYFNYKDNKKIIGSDIKLAIHQQWEPSVENIEGEYGRIVQNPTEEIKVLCGNTLEAGFFRSGFPTDSDPVETCTYPEYLKSGWNLNNILSLSGSLLSFESSEDSRNFAPKIHVGMCFCPHNWKVEEHHLYSLSYVHLGEPKVWYGIPGRFSVNFETIWKKYLPDLQAGPPDMPDNMVTQLSCSVVKAEGIPVYRCVQYPREFVLVFPGAYHSGVDCGFNCSEAVSFAPLEWLLHGQNVVELYCEQRRKTLLSYDKLLLGAAMESVRVQWETSLSMKSTSSDSLTCKDIYRKNGFLTKALKSRIQSESLKRKFLCNSLVSRRMVENFDSSCKTECTICLRDLHLSAVGCSCSDDKFACLDHAKQFCSCTWSNKILFYRYEIIDLNVLCQAVEGKLSAVFKWAKEYLGLTVNSITSTRSKQSEENVNGSTCSSQNLQTKEPISQTELDESAKGKQRQLQELLNPTKKKKNGVVPNSSKKQHKVVLKSSKKKINAVVSQVMRTSGGSSRVIHSKTKTLGRKFTISKKADPKVSIAPSVTDSRYLSFLEEHVLVDVSSDSTSTSMSSDSEYS 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01278 785 Pfam jmjN domain 81 114 IPR003349 -
Pste5g01278 785 MobiDBLite consensus disorder prediction 633 699 - -
Pste5g01278 785 ProSiteProfiles JmjC domain profile. 294 460 IPR003347 -
Pste5g01278 785 SMART cupin_9 294 460 IPR003347 -
Pste5g01278 785 ProSiteProfiles JmjN domain profile. 80 121 IPR003349 -
Pste5g01278 785 Gene3D Cupin 65 444 - -
Pste5g01278 785 PANTHER LYSINE-SPECIFIC DEMETHYLASE 75 712 - -
Pste5g01278 785 SMART JmjN_1 79 120 IPR003349 -
Pste5g01278 785 Pfam JmjC domain, hydroxylase 329 443 IPR003347 -
Pste5g01278 785 SUPERFAMILY Clavaminate synthase-like 291 486 - -
Pste5g01278 785 MobiDBLite consensus disorder prediction 633 659 - -
Pste5g01278 785 Pfam C5HC2 zinc finger 551 601 IPR004198 -
Pste5g01278 785 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01278 Pste-Chr5 8221893 8226428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01278 48 709 JUMONJI Transcription Factor Family AT1G08620 45.373 8.95e-180 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pste5g01278 JmjC 1e-29 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01278 5 8221893 8226428 Pste5g01278 5 8221893 8226428 ECH