Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01263 ATGTTGTTGTTGTTGTTCTCTCAATATTTAATTCACACCAATGTCCCCTTCAAATGCAATCACCTCACCACACATCGGCCTCGGCTACTCAATCGCCATAGCGCTAGGCTTCCTCTTCCTCCTCTCGACCCTCCTCCTATCCTCCTACCTCTGCTGCCGGAACAACCGCCGCCACCGCACCGAATCGGCCCCAACAGAAGGGGTAGTCCTGCCGCGGGTAATATTCGTGGCGGAGGAGGAGGAGGAGGAGGGGAGGCCGGGGCGGCGGTGGGGCTGGACCAGACAGTAATAAACTCATACCCGAGGTTCCAGTACAGCAGGGAGGGGGGGAGGAGCAACAACACCACCTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTAAGGATGATGCCGGAGTGCCGCCATTACTTCCACCTCTGCTGCCTCGATTCCTGGCTCAGACTCAAAGGCTCCTGTCCCGTTTGCCGCAACTCGCCGCTCCCCACGCCGCTCTCCACGCCGCTGCAGGAGGTCGTCCCGCTTTCTCACTATGCTGCTGATAGGAGGAGAAATAGGTGA 567 0.5785 MLLLLFSQYLIHTNVPFKCNHLTTHRPRLLNRHSARLPLPPLDPPPILLPLLPEQPPPPHRIGPNRRGSPAAGNIRGGGGGGGGEAGAAVGLDQTVINSYPRFQYSREGGRSNNTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLRLKGSCPVCRNSPLPTPLSTPLQEVVPLSHYAADRRRNR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01263 188 PANTHER RING-H2 FINGER PROTEIN ATL67 85 186 IPR044289 GO:0016567|GO:0016740
Pste5g01263 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 162 IPR013083 -
Pste5g01263 188 SMART ring_2 117 158 IPR001841 -
Pste5g01263 188 Pfam Ring finger domain 116 159 IPR001841 -
Pste5g01263 188 SUPERFAMILY RING/U-box 98 164 - -
Pste5g01263 188 MobiDBLite consensus disorder prediction 52 87 - -
Pste5g01263 188 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01263 Pste-Chr5 8157143 8157709 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01263 91 185 C3H Transcription Factor Family AT2G35910 55.789 1.66e-33 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01263 5 8157143 8157709 Pste5g01263 5 8157143 8157709 ECH
Pste5g01263 5 8157143 8157709 Pste6g01954 6 9052713 9056114 PCT