Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01261 ATGTCAACTCCGTCTCAGTCTCCGTCTCCCTCCATTCCCATGAGCCTGAGCCTCTCCCCCTCCAAGAATGACCTTGACTTATTCACCAAGTTGTTCCTATTTTTCTTATTCCTCTCCCTCTTCGTACGTGTATGTTATGTCTTCGTTTCCACTCGACGTGACCAACAAGACAACAACAACAGCGTCAATAGTAATAACAACACATCCACGACCCGTGATGACGATGAAGAACAAAATCACCACCCCTCGGGCCTCCCCATTCACGTCTTAAACTCCTACCACACTTTCCCATATACCAAGACCAATGTGGCAGCAATGTGTGACCATAACACCACGTGCTCCATATGCATCGAGGAGTACGAGGACTCCGACATGCTAAGGATCATGCCTCTATGTCGCCACTACTTTCACCGAGATTGCGTTGACGCCTGGTTGAAGGTTCATTCTTCCTGTCCCGTTTGTAGAAACTCGCTCCTTGAAGCCATTCATATTAATAATGGTGCTACCATGGAACGGGTCTAA 522 0.477 MSTPSQSPSPSIPMSLSLSPSKNDLDLFTKLFLFFLFLSLFVRVCYVFVSTRRDQQDNNNSVNSNNNTSTTRDDDEEQNHHPSGLPIHVLNSYHTFPYTKTNVAAMCDHNTTCSICIEEYEDSDMLRIMPLCRHYFHRDCVDAWLKVHSSCPVCRNSLLEAIHINNGATMERV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01261 173 SMART ring_2 113 154 IPR001841 -
Pste5g01261 173 PANTHER RING-H2 FINGER PROTEIN ATL67 5 160 IPR044289 GO:0016567|GO:0016740
Pste5g01261 173 MobiDBLite consensus disorder prediction 56 83 - -
Pste5g01261 173 CDD RING-H2_PA-TM-RING 112 155 - -
Pste5g01261 173 Pfam Ring finger domain 112 155 IPR001841 -
Pste5g01261 173 SUPERFAMILY RING/U-box 112 163 - -
Pste5g01261 173 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Pste5g01261 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01261 Pste-Chr5 8125274 8125795 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01261 18 171 Rapid Response to Elicitors AT3G05200 30.968 6.66e-21 86.3