Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01258 GTTGTTGGACCCTCTGCGTCAGGCTTTCCAGGTAGCTTTGTTGGGAAACAGAGATATGCTAATGCCAATGCTAATGCTATGAATGAAGACCCTTTCACTCATCTAATCACTTTACTTCTACACACTCTCATGCTTTCTAATTCGTCACTCTTCCTCTTTCACTCACAACCATGCATATAGGTCAAACAAATACAACTTCAGTGAAATGTCTTATCAACAGCATTTCTCGATTCATTCATCTAGTTTCTTGCCAATCATTGAAACCTATGCCTCTTCAGAAGAACTATAATAATATGGTTGGTGTGTTGAAGCATTTGAAACCAGTGCTCGATGAAATTGTGGATTTCAAAATCCCTTTGGATGAAAATCTGCATAGAGAATGTGAAGAATTGGATATGCAGGTTAATGAAGCCAGGGAGTTCATTGAAAAATGGGGCCAAAAGAGGAGCAGGATTCATAGTGTTCTTGAAAGTGGGGAATTGTTGATCAAGTTACAGAACTCTTCACACAAGATTTGCCACATGATAGTTAGATCCCTAAAGTCTGCTTCATGTGTTTCAGTTTTGGCTAATCTTCAGGAACTTCAGTGTCTTAAGAAGGAACCTGCAATGGTTTATATAGAAGAAGCAGTGAGAAATCAAAGGGATAATATTGAGCCTTGCTATGATCATCTAAAGGAAATTATAGGGTTACTCAAATTGACATCAAACCTGGAGCTCATGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTCAAATGCTGAAGGCAATAGAAGAAAAGGGGACTTGGATGAAATGAACCAAATTGTGAATCTTGTGTGCAATTTACGTGAATATGTAATGAAAATTGAGCCCTCTGAAGTCAAAAGTGGTGTTTCAATTCCCCCATACTTTCGATGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAGACATATGAAAGGCAATCCATACAGAAGTGGCTTGATAATGGGCTAACTGTTTGTCCCAACACTCATCAGAGACTTGTCCATTCAAATCTCATTCCCAATTATACTGTTAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTAAAATTTACCAGTAACTCTAAGCAAAGTAATTCTGCTCATGTCTTATCACACTCAGATCATTTATTACATCAAGATTTAGATTGTCTGTGTAGCTTTGAGTCTTCAGGTAGTAGCAATTCCAATTCAAATCAAACTGCAAATACGTTAGACAAGCAAAAGGATGATAACTCTTTCAGATCAAGCATGGAGTACAATAGTTGCCAGAATGGTAAGACAGAAAAGTTTGAGCAACAATCCCCTGCACCTTCATGTAGTAACAGCAGAAGTGAATCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACTTCCAGTTTCAAAAGAGGTGTTAGGCATATCTAATAGGGTTCAAAATGTGTTTTTGTCTGGTGAAATTACTAATGGGTGCCCTGCTTCTCCTCCATATAATGAATCTGGAATTTATCCTTGGTTATCTGGAAATCAATTTCATAGCCCTGCATCAAAAATTGGAAGAATGGAGTATGAAAATAAGTATAATGAGAGTACCAATACTATTATCACTAGTCATTCAAAAGTTGCTTCTCATCCTGTTTCCAACAAAGGATCTGATGAATTGATCACCACATCCCATGTGAAAGAGTTGATGGAAGACCTCCAGAGTCAATCAGATGAAATACAAACTACTGCTGCAGAAGAATTAAGGCTCCGGGCCAAGCATAGCATGGAGAATCGTATCATTATAGGGCAGTGTGGGGCTATTACCCCTTTACTTTCACTTCTGTATTCAGACATGAAGCTAACACAAGAGCATGCTGTGACTGCTCTACTGAATTTATCAATAAATGAAGGAAACAAGACATTGATTGGGGAAGCAGGGGCCATAGAACCACTTATCCATGTTTTGCAGACAGGGAATGATGCTGCCAAGGAGAATTCTGCTGCTACTCTGTTCAGCCTCTCTGTAATAGATAACAATAAGGCAAAAATTGGTCGTTCTGGTGCAATTAAAGCTTTGCTGGATCTTCTAGCCTCAGGAACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATTCAACCTATCAATATTCCATGAGAATAAAGTTCGTATAATTCAAGCTGGAGCAGTGAAGCTTCTAGTTCTACTATTGGACCCTTGTGATGGAATGGTTGACAAGGCTGTTGCCCTTTTGGCAAATCTGTCAACAATTGCAGAGGGCCGATTAGAAATTGCAAGGGAAGGGGCCATTCCCTTACTTGTTGAAATTGTTGAATCAGGCTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATCCTCTTGCAACTTTGTCTTCATAGTCGAAAGCTTTGTACCCTGGTTCTCCAAGAAGGAGCTGTACCTCCCCTAGTTGCATTATCTCAGTCTGGTACTCCAAGGGCAAAGGAAAAGTTCATTCTTCCTGTACCCTTGTCCCCAAAAACAGTGGAGGAGGAATTTTTTACTCTTCTATTTGGGGTTGTTAAGAAATTTTCCCTTGAATCTGATATCTACCAAGCAGAAAGATAG 2600 0.3915 MHIGQTNTTSVKCLINSISRFIHLVSCQSLKPMPLQKNYNNMVGVLKHLKPVLDEIVDFKIPLDENLHRECEELDMQVNEAREFIEKWGQKRSRIHSVLESGELLIKLQNSSHKICHMIVRSLKSASCVSVLANLQELQCLKKEPAMVYIEEAVRNQRDNIEPCYDHLKEIIGLLKLTSNLELMKESIAVEKERSNAEGNRRKGDLDEMNQIVNLVCNLREYVMKIEPSEVKSGVSIPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDNGLTVCPNTHQRLVHSNLIPNYTVKAMIANWCEENNVKFTSNSKQSNSAHVLSHSDHLLHQDLDCLCSFESSGSSNSNSNQTANTLDKQKDDNSFRSSMEYNSCQNGKTEKFEQQSPAPSCSNSRSESFSSSISSTDYVLPVSKEVLGISNRVQNVFLSGEITNGCPASPPYNESGIYPWLSGNQFHSPASKIGRMEYENKYNESTNTIITSHSKVASHPVSNKGSDELITTSHVKELMEDLQSQSDEIQTTAAEELRLRAKHSMENRIIIGQCGAITPLLSLLYSDMKLTQEHAVTALLNLSINEGNKTLIGEAGAIEPLIHVLQTGNDAAKENSAATLFSLSVIDNNKAKIGRSGAIKALLDLLASGTLRGKKDAATALFNLSIFHENKVRIIQAGAVKLLVLLLDPCDGMVDKAVALLANLSTIAEGRLEIAREGAIPLLVEIVESGSQRGKENAASILLQLCLHSRKLCTLVLQEGAVPPLVALSQSGTPRAKEKFILPVPLSPKTVEEEFFTLLFGVVKKFSLESDIYQAER 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01258 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 629 671 IPR000225 GO:0005515
Pste5g01258 809 SUPERFAMILY ARM repeat 499 770 IPR016024 -
Pste5g01258 809 Coils Coil 507 527 - -
Pste5g01258 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 312 IPR013083 -
Pste5g01258 809 SMART arm_5 536 576 IPR000225 GO:0005515
Pste5g01258 809 SMART arm_5 699 739 IPR000225 GO:0005515
Pste5g01258 809 SMART arm_5 577 617 IPR000225 GO:0005515
Pste5g01258 809 SMART arm_5 659 698 IPR000225 GO:0005515
Pste5g01258 809 SMART arm_5 618 658 IPR000225 GO:0005515
Pste5g01258 809 SUPERFAMILY RING/U-box 233 311 - -
Pste5g01258 809 Gene3D - 481 777 IPR011989 -
Pste5g01258 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 670 711 IPR000225 GO:0005515
Pste5g01258 809 MobiDBLite consensus disorder prediction 346 398 - -
Pste5g01258 809 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Pste5g01258 809 Pfam Armadillo/beta-catenin-like repeat 577 616 IPR000225 GO:0005515
Pste5g01258 809 Pfam Armadillo/beta-catenin-like repeat 620 657 IPR000225 GO:0005515
Pste5g01258 809 Pfam Armadillo/beta-catenin-like repeat 538 575 IPR000225 GO:0005515
Pste5g01258 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 589 IPR000225 GO:0005515
Pste5g01258 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 588 630 IPR000225 GO:0005515
Pste5g01258 809 PANTHER U BOX DOMAIN-CONTAINING 34 771 - -
Pste5g01258 809 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Pste5g01258 809 FunFam RING-type E3 ubiquitin transferase 234 310 - -
Pste5g01258 809 CDD RING-Ubox_PUB 238 290 IPR045210 -
Pste5g01258 809 Pfam U-box domain 237 308 IPR003613 GO:0004842|GO:0016567
Pste5g01258 809 MobiDBLite consensus disorder prediction 368 398 - -
Pste5g01258 809 MobiDBLite consensus disorder prediction 346 360 - -
Pste5g01258 809 FunFam RING-type E3 ubiquitin transferase 490 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01258 Pste-Chr5 8111346 8115678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01258 476 771 U-box Gene Family AT3G54790 67.224 7.08e-120 377