Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01252 ATGCACCACTTTGCCATGGACAACTCTCACCTCCTCCACTTTCTTCCCACCACCACCACCACCACCACCACCACCACCCCTTCCTTCCACACTGCACCCCACTCTCACCCCACCAATATCATCCACCACCCCTTCCTCTCTACTAATTCCTCCAATACTAATAATTACTACCCCTTCCATCTCTCCCAAACACCCTCCCACCATGATAGAGCCCTTGCTGCCATGAAGAACCACAAGGAAGCTGAGAAGAGACGGAGGGAGAGAATCAACTCCCACCTCGATCACCTTCGCACCCTTCTCCCTTGTAATTCCAAGACAGACAAGGCTTCGCTTCTGGCAAAGGTTGTCCAGCGAGTGAAGGAGCTGAAGCAGCAAACCTCGGAAATCACGGAACTGGAAACCGTTCCCTCGGAGACGGACGAGATCACGGTGCTGTCCACCGGCGGCGACTACGGCGGCGACGGGAGGCTGATATTCAAGGCCTCACTTTGCTGCGAGGACCGTTCCGATCTCATCCCGGACCTCATAGAAATTTTGAACTCGCTTCACCTGAAAACCCTGAAAGCAGAAATGGCCACGCTCGGAGGAAGAACGCGCAACGTTCTGGTGGTGGCTGCTGACAAAGAACACAGCATTGAATCGATTCATTTCCTTCAGAACTCGCTCAAGTCCTTGCTAGACCGGTCCAGTTCCACCGACAGGTCAAAACGACGCCGTGGCTTGGACCGAAGACTACTCTCTTAAACAAGGGAAACCAATCTTCTATTTCCATAACTGCACATGCAAAATGCTCTCCTTGCAACCATCACTACTCATAATATGTTTGCTTAATTTTAACAGGACATGCGTTTGCAGGTTTTAATGGCTATGCA 872 0.5138 MHHFAMDNSHLLHFLPTTTTTTTTTTPSFHTAPHSHPTNIIHHPFLSTNSSNTNNYYPFHLSQTPSHHDRALAAMKNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTGGDYGGDGRLIFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESIHFLQNSLKSLLDRSSSTDRSKRRRGLDRRLLS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01252 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Pste5g01252 247 SMART finulus 79 128 IPR011598 GO:0046983
Pste5g01252 247 PANTHER TRANSCRIPTION FACTOR BHLH30 41 240 IPR045847 GO:0003700|GO:0006355
Pste5g01252 247 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Pste5g01252 247 CDD bHLH_AtAIG1_like 69 144 - -
Pste5g01252 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 133 IPR036638 GO:0046983
Pste5g01252 247 Gene3D - 68 134 IPR036638 GO:0046983
Pste5g01252 247 FunFam transcription factor bHLH30 68 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01252 Pste-Chr5 8090017 8091503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01252 56 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 69.231 1.14e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g01252 HLH 1.8e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01252 5 8090017 8091503 Pste5g01252 5 8090017 8091503 ECH
Pste5g01252 5 8090017 8091503 Pste4g03409 4 26180033 26182576 PCT