LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g01244	ATGATTGGTGGAGAAGGAAGGTGGTGGATTGTGCTTTCTATGTGTGGCTATGATGAGGTTTGGGAAAACAGAGTAGCATCTAACTGCTGGGAGGTTAAGGTATTGGGTTTCGTGGGATTGGAAATGGTGACAACTTTCAATAGGGATGTAACTGTTGGGGAGAAGGACGATTTAATGACTGTTGGGCATGGCGAGCTCATAGGCTACAAGTTTGATACGACGGAGAATTTAAGAAACGGGGTGAAAGCTTTTGTGAGCAGTGGTGCACCACCGTCTGTTGCCAGTACACTTGGAAGATCCCATTCAAGGGCTCAGTGCCGTCAAAGGGAAAGAGGCTCTGAACATCCAACACAAGAGATAGTTTGTGGGTTTTGCAGAGTGGTCGTCAAAATGGGGAGGGCTCCATGCTGTGAGAAAATGGGGATGAAAAGAGGTCCATGGACTCCAGAAGAGGATCAAATTCTCATCAATTACATCAACTCTTATGGCCACTCTAATTGGCGTGCACTGCCCAAACTAGCTGGGTTGTTAAGGTGTGGAAAGAGTTGTAGACTCCGATGGATAAATTATCTGAGACCGGACATCAAACGAGGAAACTTTACAAGAGAAGAAGAGGACACTATAATCAGTTTACACGAAATGTTGGGAAACAGATGGTCCGCTATTGCGGCGAGGTTGCCAGGGAGAACAGACAATGAGATAAAAAATGTGTGGCACACCCACTTGAAGAAGAGGTTGCCACAAAATTACAAACAAAGCCATAACTCAAAAAGAAGCAAAAAACAACCGAATTTGGATGTGGAAGCTTCCAAATCCAGCCAAGACGCCAAACTAGAACAACAGGACCAGGGGAACAGCTTTCCCATTGATGCATCAACCAAAGAAGAGAACAAAGAGGACATTATGCCACTATCTCCTCCACAATGTTCTAGCGACATGTCCTCCCTCACCACTAGTGACAACAACACGGCATTAGATGCTAATCACATTGACACTCCAGAGAATAATCTTGCACTGGATGAGGATTTCTGGTCGGAAGTGTTGTCATCTGATAATTCAGGCGAGACAAGTGGATTTGCAACCATTCACTATGAACAGTTTCAACCAATGTCTCCTTTGGTCACAAAAGAAGGAGTTCTTATACGTAGTTCGCCAACTATGAGCGATGGCATGGACTTTTGGTGCAATGTTTATGCCAGAGCTGAGGAATTCACCCAGTTACTGGAATTGTGATTTCAGCTATTCTTGTTCTATTGTTTGGACTTCAATTAATCCCTAGTTAGAAATTAATAAATTATGTACATTAGTGATTGTTACTGGACGTGATTTTTACCAAAACCGTCATCTGTAGCAAAGCATTGCTCCGTATTCCTTATCAATGTTTTAATCATTCTGCCGTGTCCCATCTATGAGGAGTTGATTTAGAGATACGGATATTGTTTTTTATAATAGACAATTCTACTTAAATAAAATTATTATG	1480	0.4236	MIGGEGRWWIVLSMCGYDEVWENRVASNCWEVKVLGFVGLEMVTTFNRDVTVGEKDDLMTVGHGELIGYKFDTTENLRNGVKAFVSSGAPPSVASTLGRSHSRAQCRQRERGSEHPTQEIVCGFCRVVVKMGRAPCCEKMGMKRGPWTPEEDQILINYINSYGHSNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIISLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNYKQSHNSKRSKKQPNLDVEASKSSQDAKLEQQDQGNSFPIDASTKEENKEDIMPLSPPQCSSDMSSLTTSDNNTALDANHIDTPENNLALDEDFWSEVLSSDNSGETSGFATIHYEQFQPMSPLVTKEGVLIRSSPTMSDGMDFWCNVYARAEEFTQLLEL	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g01244	410	SUPERFAMILY	Homeodomain-like	140	238	IPR009057	-
	Pste5g01244	410	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	192	246	IPR017930	-
	Pste5g01244	410	Gene3D	-	143	196	-	-
	Pste5g01244	410	CDD	SANT	199	242	IPR001005	-
	Pste5g01244	410	CDD	SANT	146	191	IPR001005	-
	Pste5g01244	410	MobiDBLite	consensus disorder prediction	92	112	-	-
	Pste5g01244	410	ProSiteProfiles	Myb-like domain profile.	192	242	IPR001005	-
	Pste5g01244	410	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	131	356	-	-
	Pste5g01244	410	MobiDBLite	consensus disorder prediction	245	318	-	-
	Pste5g01244	410	FunFam	Transcription factor MYB15	198	272	-	-
	Pste5g01244	410	ProSiteProfiles	Myb-like domain profile.	139	191	IPR001005	-
	Pste5g01244	410	MobiDBLite	consensus disorder prediction	266	291	-	-
	Pste5g01244	410	Gene3D	-	199	283	-	-
	Pste5g01244	410	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	139	191	IPR017930	-
	Pste5g01244	410	FunFam	MYB-related transcription factor	143	196	-	-
	Pste5g01244	410	Pfam	Myb-like DNA-binding domain	144	191	IPR001005	-
	Pste5g01244	410	Pfam	Myb-like DNA-binding domain	197	242	IPR001005	-
	Pste5g01244	410	SMART	sant	196	244	IPR001005	-
	Pste5g01244	410	SMART	sant	143	193	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g01244	Pste-Chr5	8038719	8047503	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g01244	131	410	MYB Transcription Factor Family	AT2G31180	49.653	4.22e-83	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste5g01244		Myb_DNA-binding	1.2e-14	CL0123