Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01227 ATGTTTGATCGAAACGGGGATGGGCGAATAACAAGAAAAGAGCTAAGCGATTCCTTAAAAAACCTTGGAATCAACATATCGGAACAAGATTTGATTCAAATGATTGAGAAAATCGACGTAAACGGAGATGGGTATGTAGACATGGACGAGTTTGGAGAGTTGTACCAAACAATATTGGATGAGAAAGACGAGGAGGAGGATATGAAGGAAGCATTCAACGTGTTTGATCAAAATGGAGATGGGTTCATAACGGGGGAGGAATTGAGTGCGGTGTTGTGTTCTTTAGGGCTAAGGAATGGCAAAACAATAGAAGATTGCAAAAGCATGATCAAGAAAGTGGACGTCGATGGTGATGGAATGGTTAACTACAGAGAGTTTAAGCAAATGATGAAGGCTGGGGGGTTTGCTGCGGCTTCATTAAGTTGA 426 0.4155 MFDRNGDGRITRKELSDSLKNLGINISEQDLIQMIEKIDVNGDGYVDMDEFGELYQTILDEKDEEEDMKEAFNVFDQNGDGFITGEELSAVLCSLGLRNGKTIEDCKSMIKKVDVDGDGMVNYREFKQMMKAGGFAAASLS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01227 141 PRINTS Parvalbumin signature 76 92 - -
Pste5g01227 141 PRINTS Parvalbumin signature 54 72 - -
Pste5g01227 141 PRINTS Parvalbumin signature 113 126 - -
Pste5g01227 141 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Pste5g01227 141 Pfam EF-hand domain pair 1 56 IPR002048 GO:0005509
Pste5g01227 141 Pfam EF-hand domain pair 65 131 IPR002048 GO:0005509
Pste5g01227 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 65 131 - -
Pste5g01227 141 CDD EFh 1 51 IPR002048 GO:0005509
Pste5g01227 141 Gene3D - 1 56 - -
Pste5g01227 141 ProSitePatterns EF-hand calcium-binding domain. 39 51 IPR018247 -
Pste5g01227 141 FunFam Calmodulin 1 1 133 - -
Pste5g01227 141 ProSitePatterns EF-hand calcium-binding domain. 3 15 IPR018247 -
Pste5g01227 141 CDD EFh 71 131 IPR002048 GO:0005509
Pste5g01227 141 ProSitePatterns EF-hand calcium-binding domain. 114 126 IPR018247 -
Pste5g01227 141 Gene3D - 57 134 - -
Pste5g01227 141 ProSiteProfiles EF-hand calcium-binding domain profile. 26 61 IPR002048 GO:0005509
Pste5g01227 141 SUPERFAMILY EF-hand 1 130 IPR011992 -
Pste5g01227 141 SMART efh_1 105 133 IPR002048 GO:0005509
Pste5g01227 141 SMART efh_1 30 58 IPR002048 GO:0005509
Pste5g01227 141 SMART efh_1 1 22 IPR002048 GO:0005509
Pste5g01227 141 SMART efh_1 67 95 IPR002048 GO:0005509
Pste5g01227 141 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Pste5g01227 141 ProSiteProfiles EF-hand calcium-binding domain profile. 1 25 IPR002048 GO:0005509
Pste5g01227 141 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01227 Pste-Chr5 7980265 7980690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01227 1 137 EF-hand Containing Proteins AT3G07490 76.642 1.09e-66 197