Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01218 ATGGATTTAGATTTTGATTCCACTTTTTTTCTAGACCAAAACCATAACTTGTTGCTAGAAAACCTTAATTCCTCTGTTTGTGGAGACCCTTTTTCATGGGACTACAACTTTGGTTTTGAGGAGATCTTGGCTTGGAGCGAGCAGTCATCAGAATCACAAACCAAGGAATCATCGTCGGCATCGCAAGTTTCAGGTTGTGTTGGAGGCGTTGAGTTACAAGAAGTCTCATCCAACACAGCTTATGAAAAAGTGAAAGAAAAACAATCACCATCGGCACCGGCATCACAAGCAAAAAAGGAGAACAGGATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGAAAGTTCGCGGCAGAGATAAGGGATTCCACTCGAAACGGGGTTCGAGTGTGGATTGGAACGTTTGACACAGCTGAAGCAGCAGCTTTGGCTTACGACCAAGCCGCGTTCTCCACAAGAGGGTCTCTTGCGGTGCTGAATTTCCCTGAAGAAGTGGTGCGGGAGTCCCTCAAAGACATGCCTAGTAAGCCCTTGGAAGAGGGTTCCTCCCCTGTTTTGGCCCTCAAGAGAAAACACACTATGAGGAGAAAGTCCATTTCTAAGAAGAAAACCAAAACCGATCACAGGAATCAATTAGACTTCACTAGTACTTCGCAAAATGTGCTTGTCTTTGAGGATTTGGGTGTTGAGTACCTAGAACAGCTTTTGAGTTTGACTTCCTAG 720 0.4556 MDLDFDSTFFLDQNHNLLLENLNSSVCGDPFSWDYNFGFEEILAWSEQSSESQTKESSSASQVSGCVGGVELQEVSSNTAYEKVKEKQSPSAPASQAKKENRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKDMPSKPLEEGSSPVLALKRKHTMRRKSISKKKTKTDHRNQLDFTSTSQNVLVFEDLGVEYLEQLLSLTS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01218 239 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Pste5g01218 239 MobiDBLite consensus disorder prediction 81 96 - -
Pste5g01218 239 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Pste5g01218 239 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Pste5g01218 239 Gene3D AP2/ERF domain 103 163 IPR036955 GO:0003700|GO:0006355
Pste5g01218 239 CDD AP2 104 162 IPR001471 GO:0003700|GO:0006355
Pste5g01218 239 PANTHER DNA-BINDING DOMAIN 57 235 IPR044808 GO:0003700|GO:0009873
Pste5g01218 239 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Pste5g01218 239 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Pste5g01218 239 MobiDBLite consensus disorder prediction 81 105 - -
Pste5g01218 239 SUPERFAMILY DNA-binding domain 103 162 IPR016177 GO:0003677
Pste5g01218 239 FunFam Ethylene-responsive transcription factor 2 102 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01218 Pste-Chr5 7927906 7928625 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01218 100 235 AP2-EREBP Transcription Factor Family AT2G31230 58.228 3.62e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste5g01218 AP2 3.9e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01218 5 7927906 7928625 Pste5g01218 5 7927906 7928625 ECH