Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01213 ATGCAGATGGTCAAGGGAGGGAGAGGAGTTGTGAATGGAAACACAGAGATTCGGTACAGAGGGATTCGTAGGAGGCCATGGGGTAAGTTTGCTGCAGAGATTCGTGACCCCACAAGAAAAGGAGCTCGCATATGGCTTGGAACCTTTGACACTGCCGAACAAGCAGCACGCGCTTATGATGTTGCAGCTTTTCACTTTCGGGGTCACAAGGCCATACTCAATTTCCCAAATGAGTATGGTCACATCACTCCTAATAATCCTTCAATTTCATTGCCTCTTCCTCCCTCTTCTTCTCCTTCTTCCTGCTCTGCTGAGGGTTCGTCTCAACAACCACGAAGGGATGATGATACTTTTGAATTGGAATACTTTGACAATAAGTTGTTGGAAGAACTCCTTCAGGCGCCTGATGCTACAGGCAACTCCAACTAA 429 0.4709 MQMVKGGRGVVNGNTEIRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFDTAEQAARAYDVAAFHFRGHKAILNFPNEYGHITPNNPSISLPLPPSSSPSSCSAEGSSQQPRRDDDTFELEYFDNKLLEELLQAPDATGNSN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01213 142 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Pste5g01213 142 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Pste5g01213 142 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Pste5g01213 142 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Pste5g01213 142 PANTHER DNA-BINDING DOMAIN 18 129 IPR044808 GO:0003700|GO:0009873
Pste5g01213 142 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Pste5g01213 142 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Pste5g01213 142 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Pste5g01213 142 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Pste5g01213 142 MobiDBLite consensus disorder prediction 83 116 - -
Pste5g01213 142 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01213 Pste-Chr5 7877291 7877875 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01213 14 136 AP2-EREBP Transcription Factor Family AT3G23230 58.400 3.33e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste5g01213 AP2 2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01213 5 7877291 7877875 Pste5g01213 5 7877291 7877875 ECH
Pste5g01213 5 7877291 7877875 Pste4g01885 4 13995296 13995715 PCT