Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01209 ATGTCAGGCATAGTAGCATCTTTGGCTGAGAAGGATTGCAACCTTCGCATTGTTATGGAAGAAGAAATGGTGGGCACACATGGAGGAACCATGTGGGAGGTTGAGAAATCAATAACATCTGGAGCAATGTCATTGTTACAAAGAGTCGATGATGAATTCTATGAGTCAGGATACAACTTGAGGTTTGGGATATAGTTGTTTTCGTTCAATAAGCTTCCTTTGGATGTAACTAAGGAATCATCCTCCAATGGAGATCGAGAAATGACCTCGAATATTAGATGTGATGGGTCAAATTCAGAAGCCCCCACAACATGCACATCTAATAAGCGAGAGAAAAGACCCTATAGAGGGGTAAGAAGAAGGCCCTGGGGAAAATTCGCAGCAGAAATAAGAGACCCCACAAGAAATGGGGTTCGAGTATGGATTGGAACATTTGACACTGCTGAAGAAGCTGCTTTAGCTTATGACCAAGCAGCTTTTTTGACAAGGGGTGTTCTCGCTACCCTTAACTTTTCAGCACAACTGGTCATGGACTCACTCCAAGACATGGGCTTCAAGACCTTAAAAAATGATCGACCACCCTTGTTGGAACTCAAAAAGATGCACCTCATGAGAACAAAATCTAGGGCTAGCTTCAGGAATGGTAATAAAAAGCTCAAAAGGGCTTGCAGCAGCGATCGGAAATTGGAAACGACTCAAAATGTTTTGGTGTTGGAGGATTTGGGTCCTGAATATCTAGAGCAACTCTTGACCTTCACGTCCCCTGGTTCCTGGGATTCATGCTGGGTTGGGGATCCTAACCTGAGTAAGCAGTTCCTTAGATTATTCCTTATTACTTTACAACAACATGCAATGATCAATGACTTGGGATCTCTCAGGGATGGAGCTTGGGTTTGGAATCTGATTCTTGGAAGTGGCGATAGGAAAACATGGCTCTTACTCTGCGTAGTGGCATTTTTCCGGAGAGTGCTCTTGGATAGAATTCAGACTAGAGGCAATTTGACGTTGAGAAATTTTAGCTTTTCAGTTGCTAGTCCTATTTTCCCATTATGTAATCTTGAGAGGAACAAACTCCCATCTTCTATGTGCATTTTCTTATCAATGTTTGATGCATGTATACATTCACCGAGGGATATTCTTTTGATTTATGACGTCTTTTTTGGACTGGTGGTTGAGTAG 1179 0.4232 MTSNIRCDGSNSEAPTTCTSNKREKRPYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDTAEEAALAYDQAAFLTRGVLATLNFSAQLVMDSLQDMGFKTLKNDRPPLLELKKMHLMRTKSRASFRNGNKKLKRACSSDRKLETTQNVLVLEDLGPEYLEQLLTFTSPGSWDSCWVGDPNLSKQFLRLFLITLQQHAMINDLGSLRDGAWVWNLILGSGDRKTWLLLCVVAFFRRVLLDRIQTRGNLTLRNFSFSVASPIFPLCNLERNKLPSSMCIFLSMFDACIHSPRDILLIYDVFFGLVVE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01209 305 MobiDBLite consensus disorder prediction 1 31 - -
Pste5g01209 305 ProSiteProfiles AP2/ERF domain profile. 27 85 IPR001471 GO:0003700|GO:0006355
Pste5g01209 305 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Pste5g01209 305 PANTHER DNA-BINDING DOMAIN 17 164 IPR044808 GO:0003700|GO:0009873
Pste5g01209 305 SMART rav1_2 27 91 IPR001471 GO:0003700|GO:0006355
Pste5g01209 305 MobiDBLite consensus disorder prediction 1 18 - -
Pste5g01209 305 Pfam AP2 domain 28 73 IPR001471 GO:0003700|GO:0006355
Pste5g01209 305 CDD AP2 28 84 IPR001471 GO:0003700|GO:0006355
Pste5g01209 305 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Pste5g01209 305 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Pste5g01209 305 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Pste5g01209 305 FunFam Ethylene-responsive transcription factor 2 26 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01209 Pste-Chr5 7818923 7829777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01209 2 171 AP2-EREBP Transcription Factor Family AT3G23240 48.538 5.20e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste5g01209 AP2 1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01209 5 7818923 7829777 Pste5g01209 5 7818923 7829777 ECH
Pste4g01899 4 14167842 14168288 Pste5g01209 5 7818923 7829777 PCT