Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01205 ATGACACTGAACCACTACCCCCTTTACAAGCTTGTATATCAATGTCCCCCACCCATCAAAACTCTTGCTAACACACCACAACCTGCTTCAGATTCTGCTTTTGGTTTGCCCATTCTTGTCATCATGGTTCCCAGCATCTTTGTCACAGCTGTCATACTCATCACCTACTTAACTCTTGTGACCAAATGCTGCCAAAATTGGCTCCAAGTTAACCCCATGAGATGGATTTTCACACTACGAGCCCCACAGCATGATGACCAAGACCTCTTCATAGGACTCTCTCCCCGGATGTTAAACCATGGACTTGATGAATCTTCCATCATAGAAATCCCAACTATTCATTTCACGAAAGGAGAGGAGAATCAAAGTATGTGTTGCTGTGTGGTTTGTTTGACTGAGTTTCAAGAACATGATATGCTTAAAGTTCTTCCCAATTGCAGCCACGCCTTTCACTTGCATTGCATTGACATTTGGCTTCAAACAAATGCCAATTGCCCTCTTTGTAGATCAAACGTTATTTCAGGCAACAAACACTGTCCACTGGATCATGTCGTAGCACCAAGCTCTTCTCCTCAGGATTCTCAATTGCTCTCTTTCATGGGCATTGATGAAGATTTTGTGGTCATCGAACTAGGTGGCGAACATGGGGCAACTCTCCCTCAGATGAGGCAACAAGATACAAGTGTAATTCAGAGTACAAGTCACTCTACAAGGAAGTGTCATGGCCGTGTTTCCATCGTGGGAGATGAGTGTATTGATGTTAGGAAAAAAGACCAACAGTTTTCTATTCAGCCTATTCGAAGATCTTTCTCAATGGATTCAACATACGATAGGCAAGTTTACTTGGATTTTCGAACCATGATACAACAGAATAATACACATAAAAATCAGGCTAGTGCCAGTGATGATTGTAACAGCAGAAGTTGA 927 0.4239 MTLNHYPLYKLVYQCPPPIKTLANTPQPASDSAFGLPILVIMVPSIFVTAVILITYLTLVTKCCQNWLQVNPMRWIFTLRAPQHDDQDLFIGLSPRMLNHGLDESSIIEIPTIHFTKGEENQSMCCCVVCLTEFQEHDMLKVLPNCSHAFHLHCIDIWLQTNANCPLCRSNVISGNKHCPLDHVVAPSSSPQDSQLLSFMGIDEDFVVIELGGEHGATLPQMRQQDTSVIQSTSHSTRKCHGRVSIVGDECIDVRKKDQQFSIQPIRRSFSMDSTYDRQVYLDFRTMIQQNNTHKNQASASDDCNSRS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01205 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 175 IPR013083 -
Pste5g01205 308 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Pste5g01205 308 SUPERFAMILY RING/U-box 126 175 - -
Pste5g01205 308 SMART ring_2 127 168 IPR001841 -
Pste5g01205 308 Pfam RING-H2 zinc finger domain 121 169 IPR024766 GO:0008270
Pste5g01205 308 PANTHER RING-H2 FINGER PROTEIN ATL16 21 301 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01205 Pste-Chr5 7793653 7794579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01205 30 292 C3H Transcription Factor Family AT1G04360 42.484 2.34e-63 203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01205 5 7793653 7794579 Pste5g01205 5 7793653 7794579 ECH