Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01204 ATGGGTAGGCCCACCACTTCACTTTCACTTAGGCCTGGGCCAAGTCAGTGGGGGGACCCTGTCGGGCTCCTCCCCCCCCCAAAAAAAAACACACAAACTTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCACCATCCTAGAGACAAAGCTGGGATTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTATCCACTCCGCCCAAATGAGCCTGAATGTGCTTATTATTTAAGAACCGGACAATGTAAATTTGGGAACACTTGCAAATTTCATCATCCTCAACCAAACAATATGGTTCTTTCCATGCGGAGTTCTCCAGTTTATCCTACAGTCCATTCTCCGACTACACCAGGTCAGCAGTCATATGCAACAGGAATTACAAATTGGTCTAGTTCATCGTATATTCCTAGCCCGCGTTGGCAAGGACCTTCAAGTTATGCACCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCTGGATGGAGTGCGTACAGTGGTCAAATGGGATCAGACAGTCCACAGCAAACAATGGGAAATGACCAAAGTTATCGGCAAAGTGAACCACCAAATGCAGGATCCCAGGGGACATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGGTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAAAGACCCGATCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTTCATCATCCTCGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCCATAGGCCTTCCTTTACGTCCCGGAGAGCCTCTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTCTTCACCTATAACATATCTGCATCACCTTCAGCTGATACCCCAGGACGGCGTATGTTAGGTTCTTCATCGGGAACTTCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGTCAGGCTCAGCAAATCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATGACATTGATGAAGAGGGATAATGATGTCTCTTGGAAATGGGTCATTTGCTTTTTACAAAAAATTTTTTCAGGGGAGAAAAGGGTAATCTGTAAATTGATTTTCCCATTGCTGAAGATGTACAGACTACAGAGTTCATGTCAAGCTTATTCTGTTGACCTGCTATTTAATGCAGTTGACAGATTCAGTTGTTCTGAATTTCATGCTGCCACATTGTATAAATTTTACAAATATTTGTCACATTTGGTGAAAACCCAATGTGAACATTTCTTCAGTCCTTAAGTCAGTCTATCTATTTAATGTTTTCTCAATATGTAAAAGTGTTTTCCCGAAAATCTATAATGATCAATATTTGGCTCCTGTTGAATCTTTCTTTGGTGCAGGTTTGAAATTCAGTGCAAAGACTTTTCTTTACGCTGTCTACTGTGCATACATAGAAATCTTTTTCAACAGCAAACCAACAAAGTTGAAGCGAAAGAATCTAAACTGTGAATTTTGGTGTCAGCAGAAGCACGTTAATTTATGCTACTTTGCTGGTACAAATTACTTAATTACATGCTTCAATTAATGCTGGATGGATGGTCATATCTGGCATGGAGTTGGATTAACAGTTCGCATGCAACTAAATCATGGTCGGGTTAGTTTAAACTTTTGTGGAGGCTTTATTAGAAGCATTTGCCAGTGGCTGAATATAGGTGTATTTGATGCGTTCGCTGATTCTAGTGTGTGTTATCAATATGCTTACACAGCATGTTTGGATCAACGTCAATTTCGTTCAAAACAACACACCATTTTGAAGTTGTCATGATGCGAGTTTTTCCCTGCCTGTGGACGTGGAACCAAACAGGCTGTCAACTTGCATGTATTTTTCAAGCTTCGTTGGTTACTAGGTCACAGAAATACGAAAGACTTCTATACGGTACAGCATTAATTCAGTT 2016 0.4137 MGRPTTSLSLRPGPSQWGDPVGLLPPPKKNTQTYYLKTGTCKFGATCRFHHPRDKAGIAGRVALNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPTVHSPTTPGQQSYATGITNWSSSSYIPSPRWQGPSSYAPLILPQGMVSVPGWSAYSGQMGSDSPQQTMGNDQSYRQSEPPNAGSQGTYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFTYNISASPSADTPGRRMLGSSSGTSALNLSSEGLVESGSANPRRLSLSETRQIPSGDDDIDEEG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01204 366 Gene3D - 218 302 - -
Pste5g01204 366 ProSiteProfiles Zinc finger C3H1-type profile. 272 300 IPR000571 GO:0046872
Pste5g01204 366 ProSiteProfiles Zinc finger C3H1-type profile. 72 100 IPR000571 GO:0046872
Pste5g01204 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 253 IPR000571 GO:0046872
Pste5g01204 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872
Pste5g01204 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 34 53 IPR000571 GO:0046872
Pste5g01204 366 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 75 99 IPR000571 GO:0046872
Pste5g01204 366 MobiDBLite consensus disorder prediction 311 366 - -
Pste5g01204 366 MobiDBLite consensus disorder prediction 1 24 - -
Pste5g01204 366 Gene3D - 27 110 - -
Pste5g01204 366 SMART c3hfinal6 72 99 IPR000571 GO:0046872
Pste5g01204 366 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Pste5g01204 366 SMART c3hfinal6 272 299 IPR000571 GO:0046872
Pste5g01204 366 SMART c3hfinal6 30 53 IPR000571 GO:0046872
Pste5g01204 366 ProSiteProfiles Zinc finger C3H1-type profile. 26 54 IPR000571 GO:0046872
Pste5g01204 366 SUPERFAMILY CCCH zinc finger 75 100 IPR036855 GO:0046872
Pste5g01204 366 MobiDBLite consensus disorder prediction 170 202 - -
Pste5g01204 366 PANTHER PROTEIN PHOSPHATASE RELATED 33 319 - -
Pste5g01204 366 MobiDBLite consensus disorder prediction 311 355 - -
Pste5g01204 366 FunFam CCCH type zinc finger protein 224 309 - -
Pste5g01204 366 SUPERFAMILY CCCH zinc finger 229 255 IPR036855 GO:0046872
Pste5g01204 366 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Pste5g01204 366 SUPERFAMILY CCCH zinc finger 275 299 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01204 Pste-Chr5 7792489 7798604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01204 34 363 C2H2 Transcription Factor Family AT3G02830 59.941 5.54e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste5g01204 zf-CCCH 4.3e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01204 5 7792489 7798604 Pste5g01204 5 7792489 7798604 ECH