Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01194 ATGAACATGGATATGTGCCAAAATGTATCAGTTTCTGGTGAGTGCCAACAAGAGCATGTCCTTGCCCCTTCTTGCTCAAGTAGCCTTGACGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGAGTTGGAGTGGCTTTCAGAGTTTGTTGAAGACTGTTTTTCAAGCCCCCCAAGCTGTGTCTTGGTACCTGCTGTTGTTCAGACTACAAGCACCAACCCTTCTTCAGGCACATTGAAGAGACCCCAACAAAATGAGTCTCCTTTGCAAAATTTTGCAGTGCCTGGGAAGGCCAGGAGCAAAAGGAAAAGGCTTTCAGCTCCAAGAACCAAAGACCCTTTAAGCATCTGGTCACACCATTTGAACCCTCAAAATGAAGCCTTGAGTTCTGACCCTCCTCTACTAAAACAGGCTTATTGGTTGGCTGACAGTGAACTCATTATGCCTAAGCCAAAGGAGGAGCAAGAGGTGGCCAAAGAGGATAGAGAAGTGGTGGAGAAGAGGGTTGTAATGAGCAAGGAAAGCTATGTGGACTCTGACCTTGAGGGTAGCAATGGTCAACAACCAATGCCAAGGAGGTGCACCCATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGCCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTACCAGAATATAGGCCAGCCAAGAGTCCTACTTTTGTGAGCTATTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGGCTGTTTACTCTTCCATTTCTAGTGAGCAGTAG 807 0.4771 MNMDMCQNVSVSGECQQEHVLAPSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPPSCVLVPAVVQTTSTNPSSGTLKRPQQNESPLQNFAVPGKARSKRKRLSAPRTKDPLSIWSHHLNPQNEALSSDPPLLKQAYWLADSELIMPKPKEEQEVAKEDREVVEKRVVMSKESYVDSDLEGSNGQQPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVYSSISSEQ 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01194 268 SMART GATA_3 189 243 IPR000679 GO:0006355|GO:0043565
Pste5g01194 268 CDD ZnF_GATA 194 241 IPR000679 GO:0006355|GO:0043565
Pste5g01194 268 MobiDBLite consensus disorder prediction 96 118 - -
Pste5g01194 268 FunFam GATA transcription factor 185 268 - -
Pste5g01194 268 Gene3D - 185 257 IPR013088 GO:0006355|GO:0008270
Pste5g01194 268 ProSiteProfiles GATA-type zinc finger domain profile. 189 225 IPR000679 GO:0006355|GO:0043565
Pste5g01194 268 ProSitePatterns GATA-type zinc finger domain. 195 220 IPR000679 GO:0006355|GO:0043565
Pste5g01194 268 PANTHER GATA TRANSCRIPTION FACTOR 25 259 - -
Pste5g01194 268 Pfam GATA zinc finger 195 229 IPR000679 GO:0006355|GO:0043565
Pste5g01194 268 MobiDBLite consensus disorder prediction 72 91 - -
Pste5g01194 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 190 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01194 Pste-Chr5 7713765 7714859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01194 42 257 C2C2-Gata Transcription Factor Family AT4G32890 41.964 5.26e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste5g01194 GATA 1.1e-14 CL0167