Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01179 ATGGTGATAATGATTATGATTTGCACAAAGCTGAAGACACCCAGAAACCCCCCAAACAAAAGGCCAATATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAGGGTGCCACCCATTTTGCAGCTATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTCCCTGTGAGTGACCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCTCATATATTTGCACTCCAACAACAGGTGGTAAATTTACAAGCACGGCTAGCTTATCTAAGGGAACAAGCAGGTCAGATCTATCTCAATGCCTCTGCCACTGAAAACCCTAATGAGAAATACCTTCGAAAACCTACTACTTTTCCCCAATATCTTCAAAATTGGTTCCAGATGGAGAATTCCAACATGGCTTCACAATTTCTTCCTAACTTGTCCACCAATCCCTCAACACAGTATTATGAACATACTAATACCCTCATGGAGCCAAACCCTATTGGAAATTATGAAAATTCAGGAACCATAGAGGAAAGCATCTCATTCTCTGACTTTGAAGAGAGTTGTAACTCCATGTCCTACGATATGCAAACCCAGTGGGGCTTTTCA 704 0.4247 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQARLAYLREQAGQIYLNASATENPNEKYLRKPTTFPQYLQNWFQMENSNMASQFLPNLSTNPSTQYYEHTNTLMEPNPIGNYENSGTIEESISFSDFEESCNSMSYDMQTQWGFS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01179 212 Coils Coil 87 107 - -
Pste5g01179 212 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Pste5g01179 212 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Pste5g01179 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01179 Pste-Chr5 7631040 7631849 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01179 7 204 AS2 family AT3G58190 56.000 9.99e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste5g01179 LOB 1.3e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01179 5 7631040 7631849 Pste5g01179 5 7631040 7631849 ECH
Pste5g01179 5 7631040 7631849 Pste4g01957 4 14502795 14503761 PCT