Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01174 TGTTACTATGGCTTCTGCAAGTGGAAATGGTGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTGAGGCGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTTGCAGCCATACACAAGGTCTTTGGTGCCAGCAACGTTTCCAAGTTGCTTTTGCATATACCTGCTCATGATCGTTGTGAAGCGGTTGTCACTATTGCCTATGAGGCTCAGGCTCGTATCAGAGACCCTGTCTATGGATGTGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAGGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACCTGATGGAGTCCAGAAACATAGAGAATCATCATCAGTGGCCAGGGAATAACAGTGTTGCAGGACAACCAATGAATCATCCATTTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGTAGCATCAATGATGGAATGAACATGCAAGATATACAAAGCAGAGAGGATTTTCCAATCCAAGCTAAAGAGAGATCATACAACAACACTGACTTGGGGGAGCTGCAAGAACTGGCACTCAGGATGATGAGAAACTGATTATGACTAGGTTGGCAGCAAAGCTAGCCTTTTCATTTTCTAGAAGGATGTTCCTTGATGTTGAGGGGACATGGTCTTTTGCTAGTGTTGTATATATAATGAGAGTGTCATGAAGAAAACTGGCCATAACTGATAAGCCTAAAGTTTGAACTAAGCATTAGGCTTTTTCTGTTTGTGGATTCAATCCAAAAGAAATTAATTTTTTGC 844 0.4408 MASASGNGGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLMESRNIENHHQWPGNNSVAGQPMNHPFCPTYMNPISPQSSLESIDHSSINDGMNMQDIQSREDFPIQAKERSYNNTDLGELQELALRMMRN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01174 209 Pfam Lateral organ boundaries (LOB) domain 13 111 IPR004883 -
Pste5g01174 209 Coils Coil 93 113 - -
Pste5g01174 209 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 171 - -
Pste5g01174 209 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01174 Pste-Chr5 7606414 7607899 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01174 3 209 AS2 family AT2G42430 55.102 5.38e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste5g01174 LOB 7.9e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01174 5 7606414 7607899 Pste5g01174 5 7606414 7607899 ECH
Pste5g01174 5 7606414 7607899 Pste4g01961 4 14532195 14533871 PCT