Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01164 ATGTCGTTTACCATGGACTTAAACTACCCAGAAGAGTGCTGCTCCAAGAGCTCCAGTGAAGAAAATAAAGATGATATGATGGGAAGCGGCAGACCCTATGAGTGCATCTTTTGCAAGAGAGGCTTCACCACAGCACAAGCCTTAGGTGGACACATGAACATTCACAGAAAGGAAAGGGCCAACAAGTCTAAACCCAGTTTCCCTTCTCTCCCTTCCAGTTCACATTCACACAAAGTTGATGCCGTCAACAACTATGCAGATCTCGGGTTCTATTCTCAAATTCCAACCCACTCCACTGCTCCTCATGCTAATACCTTCCTTGAACCTTTCTTTCCTGCCACTGCACCAAGTATTAGACCTTCCCATGACCAACGGGACCATGTGTTTGCACAAGATTGGTGGAAGAGCAATTTGACCTTTTACACCAATCCGTTGTGTTTTCGTGAAATTCAAGACAAGTTTGAAGAGAGTGAAGAGAATGGCCTGGATTTGGAGCTCAGGCTTGGTCATCATCCATAG 519 0.4547 MSFTMDLNYPEECCSKSSSEENKDDMMGSGRPYECIFCKRGFTTAQALGGHMNIHRKERANKSKPSFPSLPSSSHSHKVDAVNNYADLGFYSQIPTHSTAPHANTFLEPFFPATAPSIRPSHDQRDHVFAQDWWKSNLTFYTNPLCFREIQDKFEESEENGLDLELRLGHHP 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01164 172 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Pste5g01164 172 PANTHER OS07G0101800 PROTEIN 20 171 - -
Pste5g01164 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Pste5g01164 172 SUPERFAMILY beta-beta-alpha zinc fingers 30 60 IPR036236 -
Pste5g01164 172 Gene3D Classic Zinc Finger 14 86 - -
Pste5g01164 172 Pfam C2H2-type zinc finger 33 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01164 Pste-Chr5 7555841 7556359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01164 33 169 C2H2 Transcription Factor Family AT5G43540 32.847 8.61e-18 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01164 5 7555841 7556359 Pste5g01164 5 7555841 7556359 ECH
Pste5g01164 5 7555841 7556359 Pste4g01969 4 14581125 14581715 PCT