Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01160 TTCTTCTTCTTGGAATTGATTCATATTCCTCTTTTCATTCTCTTCTGTAGCTTTCTATTTTTGCTAGCTTGAAAATACTACAGGGTTTTAAGATATTTATAATATTTGAATACTTCAAAAACCCATATATTTGATATCATGGAAGAGCCTATTGTTTTGAACAAAGGTGAGGAGCCCCTAGATTTGCCTCCAGGCTTCAGGTTCCACCCTACAGATGAGGAGATAATTACTTTTTATCTGACTGAAAAGGTGAAGAATAGTAATTTCAGTGCAATTGCTATTGGAGAGGCTGATTTGAATAAGTGTGAACCTTGGGATTTACCAAAGAAATCAAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAAGATAGGAAGTATCCAACTGGCATGAGAACCAACAGAGCCACAGAATCTGGGTACTGGAAGGCCACCGGAAAAGATAAGGAAATTTACAAAGGGAAAGGCAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTACAAAGGAAGAGCTCCAAAGGGTGAGAAGACCAATTGGGTCATGCATGAATTCAGATTGGAGGGCAAATTTGCAAGTTACAACCTTCCCAAGGCAGCAAAGGATGAATGGGTTGTCTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGTCCTCAATTCCTGGCCTTTTGAGGATAAACTCCATTGGGGATGATCTTCTTGATTACTCTTCACTACCACCTCTCATGGATCCTCCTTATGGCGACGCCACCAACAACAACACCGCTAACCCACTTTCATCAACTAAATCACAATCAGAGGGCTATTATCTTCCCAGTTTCTCCATCAACAACCACCACCAGCTTCTCATCAAGCCAGAAGACCACCACAGAAGCTATGACATTCCAGCAATTAACTACACCTCCAACCAAGCCATTCTCAGCAACAACGTCAACCCAATGGGGAACAACACACTCTCACAGCCCTTAAACTCGTTCTCTGATTACTATATGCACCAAAACAGGATCAAAAGTTCCATCATTCCAGGCTCGGGTTTTGGCAGCAGTAACAACAATGATGAAGCTATTCTAAGAGCATTTGCAGCCAAGAACAACGAGCACTTGGGTGGAATCTTGGACAAACAGTGCAAGATGGAGCAGTTCTCTTCTAACCACTCACAAGACACAGGCTTAAGCAACGACAGAAACACTGACACATCCTCGGTGGTATCAAAGCAAGACAACAACATGGGAATAAATAGGGCATTGTACGAGGATCTTGAGGGTCCTTCTTCAGTTGCACGTCTCTCAGATTTGGAATGCCTGCAGTGGGATGACTACTGAAGAAGATAAGACAATTATATATAGCAAGTTAGCAGATCCATCGTTTTTTCATTCTGGGATCATAAGCATCGTGCATAGTAATCAATCGAATACCCTTTTTTTTTTTTTACTTTGTTGATTTTATCATTATAAACTTGATCATACACATTATTAATTGGAATCATAGGAAAGTTCATGGGTACACATACACTGTATAGATATTTATGATATCCAGACCTTTTCGGTGTTAGTTTTTCCATTCATAGGTTATATCGAAGGGAGGACTTGATGAATCATGTACATCTATATTCTTTTGTTATATTAGTGGGTTTGTTTTTTTATTCTTTTCTTTCAATTTTTTTTGCTTCTGTCATATATTCCAAGTTCAACTCGTCGCTTCTGTGTACAAATCAGAATTTTCTTTGTATTAAATCTAGTTGAATTCTTCGGAGTACTTTCTATTCCTTTGTTCTTTTGTGTAGATATTTCCAACAAAA 1805 0.3911 MEEPIVLNKGEEPLDLPPGFRFHPTDEEIITFYLTEKVKNSNFSAIAIGEADLNKCEPWDLPKKSKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKSSIPGLLRINSIGDDLLDYSSLPPLMDPPYGDATNNNTANPLSSTKSQSEGYYLPSFSINNHHQLLIKPEDHHRSYDIPAINYTSNQAILSNNVNPMGNNTLSQPLNSFSDYYMHQNRIKSSIIPGSGFGSSNNNDEAILRAFAAKNNEHLGGILDKQCKMEQFSSNHSQDTGLSNDRNTDTSSVVSKQDNNMGINRALYEDLEGPSSVARLSDLECLQWDDY 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01160 396 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Pste5g01160 396 FunFam NAC domain-containing protein 100-like 25 171 - -
Pste5g01160 396 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Pste5g01160 396 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 289 - -
Pste5g01160 396 MobiDBLite consensus disorder prediction 338 363 - -
Pste5g01160 396 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Pste5g01160 396 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01160 Pste-Chr5 7539897 7541999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01160 1 394 NAC Transcription Factor Family AT5G18270 49.148 1.89e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste5g01160 NAM 1.7e-39 No_clan