Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01152 ATGGAAGGAAACTATCTGACCAGAAACACGCATAAAGGGGACAGGCATGGCTTTGAGGAGCATTCATGGGGTAGTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCTGCTCAAGCCTTGGGCGGCCACATGAATGTTCATAGAAGGGATAGGGCAAGATTGAGATCTTCCTTACCTTCATCATCATGGGTTTCTGAGTGTCCTAAACCTAACCCTAGCATTAAGCCCAACCCAACTCATCTTTCACCCTCCTCTTCATCATCATGTCTATCTAATAACTTCTTGAATTGTGCAAATATTTCTGCACTTTATAGGCCTTCCTTGACTTTGTCTTCTTCACTGACCTCAACTTCTCCCAAGGGAGATAAGAAACCAAGACTTGTATCTTCCCAGACTCTTCCTCTTTCAGTTCCCCAGAGCAGTCAGGAAATTATGATGAGTAAGAACACAGGGAATGATTTAGGAGTTGAAGAAGTACAGGGTTGTGTAATGGGAGAGGAATGCAAGGTTTTCAAGGGCAGTGAGCATAGCCTCAAGCTGGAGTTGGGAATAGGGTTGCTTAAACTACCAAAGGAGAAGTTAGATTTGGAGCTGCGATTGGGGCACTACTAA 633 0.4423 MEGNYLTRNTHKGDRHGFEEHSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLPSSSWVSECPKPNPSIKPNPTHLSPSSSSSCLSNNFLNCANISALYRPSLTLSSSLTSTSPKGDKKPRLVSSQTLPLSVPQSSQEIMMSKNTGNDLGVEEVQGCVMGEECKVFKGSEHSLKLELGIGLLKLPKEKLDLELRLGHY 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01152 210 MobiDBLite consensus disorder prediction 7 21 - -
Pste5g01152 210 PANTHER OS07G0101800 PROTEIN 16 209 - -
Pste5g01152 210 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Pste5g01152 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Pste5g01152 210 SMART c2h2final6 32 54 IPR013087 -
Pste5g01152 210 MobiDBLite consensus disorder prediction 120 146 - -
Pste5g01152 210 MobiDBLite consensus disorder prediction 62 89 - -
Pste5g01152 210 Gene3D Classic Zinc Finger 19 74 - -
Pste5g01152 210 Pfam C2H2-type zinc finger 32 56 - -
Pste5g01152 210 MobiDBLite consensus disorder prediction 1 23 - -
Pste5g01152 210 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01152 Pste-Chr5 7513790 7514422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01152 27 209 C2H2 Transcription Factor Family AT2G42410 39.487 9.63e-24 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g01152 zf-C2H2_6 6.8e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01152 5 7513790 7514422 Pste4g01970 4 14591515 14592147 PCT