Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01145 TCTCTTTCCCTCTTTGCTTTCAAGTGCTCCCAATTAAGCTTAGGTACTTGTTTTGTTTAATTTTCTGTCTTCATTCTCATCCTCATCAAACCCCACACAACAACAACTTTTAGCTATAGCCAATTATTAGGCACATCATGGGAAGTCCAGAGTCCAATTTGCCACCCGGGTTTAGGTTCCACCCAACGGATGAAGAGCTCATTCTTCACTACCTTTCCAAAAAGGTTGCATCCATACCCTTGCCTGCTTCTTCCATCATTGCTGAGGTTGATATCTACAAGTTAGATCCATGGGACTTGCCAGCAAAGGCGACCTTTGGGGAGAAAGAATGGTACTTTTTCAGTCCAAGAGATCGAAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACTGATAAGACCATAATGGCATCAATGCAAGGAGGAGCACAAGAGAACATTGGTGTGAAGAAGGCTTTGGTATTCTACAAAGGAAGACCACCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGCCAACATCAAACCCATTAAGCTCAATGACTCATCCATGAGGTTGGATGACTGGGTGCTGTGCAGGATATACAAGAAGTCCAAACATACTATAACTTCAACTGAGGCATCAATAGGGGTAGGTGAGGTGGATCAAGCAGAGGAGCACCACCTATTCAAAGAGACCCTTTTGCCAATGTCAAAAACTCCAACTCCAACTCTTCCTCAAAACACATTGATCTCTCAGAAATCTGTATCCTTCTCCAACCTGTTGGATGCCATGGACTACTCGGTCCTCAGCAGTTTCTTATCTGAGAATCATTCCAACACACCAGGAATTGGATCAAGTGCAGGCTTCGACAGTGGGAGTTTGGATCAGCAATCTGATCCAATCCACAACCCCACCAACAGTTACATGTTTCAGAAGAACCCCCAATTGAACCATTCAGTCTCCAACATGGAAAACATGAAGCCAAAACGCCAAGCTTCGAACATAGATGAGGAAACGTTGTACCCATCAAAGAAATTCCTTAGTTCCTCTTGCAACTTTCCTACTAACCTCAACACCCAATACGAGAACCAGCAATGGAACTACCTCATGAAGCAGTCTCTGTTTAATCAGAGGTTACTGCTTGGTCCTCAACTTCAATTTCAAGGATAATCCAAAAATACCAAAAGATTAAGCCAGGCAAAAAAAAATTGAAATAGAAAAATTAAGAAAAAGTAAAATATTCAGCAGCTGAGCCCACCAAAGAACATCACCAATTTGATAATTAGTAATTTAGTACATAGAAATTATAGCAGTTTTTTTTCTTCTCTTTAATTATTTTATGCTGGAAAACGAAGAATAGATTAGCTTGGAAGGAAGAACAATTTGGTAGGGAGTCAAAAGAAAGATTCCACCATTCAAGGTTCAAGAAACTGTCAAGACAAAATATCCAAGTTTCTATGACAAATCATAAACAACTTATGTACAAAATGCTAATTTGTACTTGTTGGGGTTTGGAGGTTAGCTTTATAATATACTTTGTAGATAAGGTATTGTACTTGATTGTAATGTTGATATTTTTCATTCTTTTCCTGCAAAGGATAGTTAGGTACGAATTTTCTTCTGTGTTTGGAATGCCACCATTTGCCATTTCAG 1679 0.4032 MGSPESNLPPGFRFHPTDEELILHYLSKKVASIPLPASSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIMASMQGGAQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLVANIKPIKLNDSSMRLDDWVLCRIYKKSKHTITSTEASIGVGEVDQAEEHHLFKETLLPMSKTPTPTLPQNTLISQKSVSFSNLLDAMDYSVLSSFLSENHSNTPGIGSSAGFDSGSLDQQSDPIHNPTNSYMFQKNPQLNHSVSNMENMKPKRQASNIDEETLYPSKKFLSSSCNFPTNLNTQYENQQWNYLMKQSLFNQRLLLGPQLQFQG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01145 352 SUPERFAMILY NAC domain 5 166 IPR036093 GO:0003677|GO:0006355
Pste5g01145 352 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Pste5g01145 352 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
Pste5g01145 352 Gene3D NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
Pste5g01145 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 278 - -
Pste5g01145 352 FunFam NAC transcription factor 56 17 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01145 Pste-Chr5 7476999 7479173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01145 4 352 NAC Transcription Factor Family AT3G04070 51.685 9.85e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste5g01145 NAM 3.2e-41 No_clan