Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01139 ATGGGGTCTATGAATTTGTTGGGGTTTTCTCTCTCCCCTCAAGAACACCCTTCTAGTCAAGATCACTCTCAAACGGCACCTTCTCGTTTTGCTTTCAATCCTGATGGAATCTCAAGCACTGATGTACCAGGAAACTGTTTTGATCTTACTTCTGACTCAACTCCTCATTTACTCAACCTTCCTTCATATGGCATATATGAAGCGTTTCATAGGAACAATAATATTCAAACCACTCAAGATTGGAAGGAGAACTACAACAACCAAAACTTGCTATTGGGAACTTCATGCAGTAACCAAAACATGAACCACAACCAACAGCAGCAACAACAACCAAAGCTTGAAAACTTCCTGGGTGGACACTCTTTTGGAGAACATGAGCAAACATACGGTGGTAACTCAGCCTCAACAGATTACATGTTTCCGGCTCAGCCGGTAGCAGCCGGAGGCAGTAGCGGTGGTGGTGGTAGCAGCAGCACGAGTAACAGTAACTCCATAGGGTTGTCCATGATAAAGACATGGTTGAGGAACCAACCACCACCCTCAGAAAACAACAACAGCAACAATGAAAGTGGTATCAATAATAGAAGCAGTACTGTTCAGACTCTATCTCTTTCTATGAGTACTGGTTCACAATCAAGCTCTTCGCTGCCCCTTCTAACTGCTAGTGTGGATAATGGAGAGAGCTCTTCAGATAACAAACAACCACTCGCCACATCAGCACTTGATACATCCCAAACTGGAGCCATTGAAACCGCACCCAGAAAATCCATTGACACGTTTGGACAGAGAACTTCTATATACCGTGGTGTAACAAGGCATAGGTGGACGGGCAGATATGAGGCTCATCTTTGGGATAATAGTTGTAGGAGAGAGGGACAAACTCGAAAGGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACAACAACAAATTTTCCTATTAGCCACTATGAGAAAGAGTTTGAAGAAATGAAGCACATGACTAGGCAGGAGTATGTTGCGTCACTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACGAGACACCATCAACATGGTAGATGGCAAGCGAGGATTGGAAGAGTTGCGGGAAACAAAGATCTCTACTTGGGAACTTTCAGCACCCAAGAAGAGGCTGCAGAAGCATATGATGTTGCAGCCATAAAATTCCGAGGGCTAAGTGCTGTGACAAACTTTGACATGAGCAAATATGACGTTAAGAGCATACTTGAGAGCCCGACTTTGCCAATTGGTGGTGCTGCAAAGCGTTTGAAGGACATGGAGCAGGTGGAACTGAGTATCGAAGGCCATAGAGCAGATCAAGAAGATCATAGTAGCATCATAAGCTCTCATCTAACTCAAGGAGTGAATAATAACTATGCAGGAGGCACAACTCATCATAACTGGCATAATGCTCTTGCATTCCACCAACCTCAACCTTGCACCACCATATATCATCCTTATGGACAAAGAATGTGGTGCAAGCAAGAACAACAAGATAATTCTGATGCCTCTCACCCTTTGTCATCTTATCCTGATATTCATCAACTTCAGCTAGGGAATAATGGGACACACAATTTCTTTCATTCAAATTCCGGGTTGCACCCTATCATGAGCATGGATTCTGCTTCCATTGACAATAGCTCTTCATCTAACTCAGTTGTTTATGATGGCTATGGAGGTGGAGGCTACGTGATGCCTATGGGGACTACTGCTGTTGTTCCGAGTGATGGTGATCAAAATCAAAGAGGCAATAATGGTTTTGGTGATAATGCGATAAAGGCTCTTGGTTATGATACTGTTTATGGTTCTACTGATCCCTATCATGCACACTCAAGGAACTTGTACTATCTTTCTCAACAGCAATCATCTTCTGTGGATGCAGTCAAGGCTAGTGCATATGATCAAGGATCTACATGCAATACTTGGGTTCCAACTGCTATTCCAACTCTTGCACCAAGGTCTACCAGTATGGCTCTCTGCCACGGTGCTACACCTTTCTCGTTATTGCATGAATAG 2088 0.4387 MGSMNLLGFSLSPQEHPSSQDHSQTAPSRFAFNPDGISSTDVPGNCFDLTSDSTPHLLNLPSYGIYEAFHRNNNIQTTQDWKENYNNQNLLLGTSCSNQNMNHNQQQQQQPKLENFLGGHSFGEHEQTYGGNSASTDYMFPAQPVAAGGSSGGGGSSSTSNSNSIGLSMIKTWLRNQPPPSENNNSNNESGINNRSSTVQTLSLSMSTGSQSSSSLPLLTASVDNGESSSDNKQPLATSALDTSQTGAIETAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEFEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSKYDVKSILESPTLPIGGAAKRLKDMEQVELSIEGHRADQEDHSSIISSHLTQGVNNNYAGGTTHHNWHNALAFHQPQPCTTIYHPYGQRMWCKQEQQDNSDASHPLSSYPDIHQLQLGNNGTHNFFHSNSGLHPIMSMDSASIDNSSSSNSVVYDGYGGGGYVMPMGTTAVVPSDGDQNQRGNNGFGDNAIKALGYDTVYGSTDPYHAHSRNLYYLSQQQSSSVDAVKASAYDQGSTCNTWVPTAIPTLAPRSTSMALCHGATPFSLLHE 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01139 695 MobiDBLite consensus disorder prediction 1 37 - -
Pste5g01139 695 FunFam AP2-like ethylene-responsive transcription factor ANT 265 331 - -
Pste5g01139 695 MobiDBLite consensus disorder prediction 116 254 - -
Pste5g01139 695 FunFam AP2-like ethylene-responsive transcription factor 364 425 - -
Pste5g01139 695 SMART rav1_2 365 429 IPR001471 GO:0003700|GO:0006355
Pste5g01139 695 SMART rav1_2 266 335 IPR001471 GO:0003700|GO:0006355
Pste5g01139 695 CDD AP2 364 425 IPR001471 GO:0003700|GO:0006355
Pste5g01139 695 SUPERFAMILY DNA-binding domain 265 331 IPR016177 GO:0003677
Pste5g01139 695 PRINTS Ethylene responsive element binding protein signature 267 278 IPR001471 GO:0003700|GO:0006355
Pste5g01139 695 PRINTS Ethylene responsive element binding protein signature 405 425 IPR001471 GO:0003700|GO:0006355
Pste5g01139 695 CDD AP2 265 331 IPR001471 GO:0003700|GO:0006355
Pste5g01139 695 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 519 - -
Pste5g01139 695 ProSiteProfiles AP2/ERF domain profile. 365 423 IPR001471 GO:0003700|GO:0006355
Pste5g01139 695 Gene3D AP2/ERF domain 266 331 IPR036955 GO:0003700|GO:0006355
Pste5g01139 695 Gene3D AP2/ERF domain 365 425 IPR036955 GO:0003700|GO:0006355
Pste5g01139 695 Pfam AP2 domain 365 415 IPR001471 GO:0003700|GO:0006355
Pste5g01139 695 Pfam AP2 domain 266 321 IPR001471 GO:0003700|GO:0006355
Pste5g01139 695 ProSiteProfiles AP2/ERF domain profile. 266 329 IPR001471 GO:0003700|GO:0006355
Pste5g01139 695 SUPERFAMILY DNA-binding domain 364 425 IPR016177 GO:0003677
Pste5g01139 695 MobiDBLite consensus disorder prediction 150 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01139 Pste-Chr5 7435077 7439123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01139 164 595 AP2-EREBP Transcription Factor Family AT5G17430 52.928 7.68e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pste5g01139 AP2 3.7e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01139 5 7435077 7439123 Pste5g01139 5 7435077 7439123 ECH