Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01124 ATGATCAGAATCAGATCTAACTTACCTCTTTTCTCTGTTATGTTATTGCGCATAGGTCATAACTCACTTGCTGTTAATCATTGCAATATAGTAGAACAATCCCTTATGAGTGCTAGTTTCAATTTCTTTAACCCTTTTAAGTCTGAAACCTTTCTAGCACCACCACAATTTGGTTTTTCAGTCTGGTCATTTTCTACTTCATCTTCAACCAGAAGCCTCGGGGGGTCAACTGATTGCCCAACACATGAGGCCCTGAGTGACAATGATGACAACAATGAGGATGAAGATGATGTTGATTGTCACAAGAGTAAAGATAAGAATTGTACACATTTAAGGGATGCTGGTCTTGCCCAGGATGTTAAAACCATTTTGGATATGATACATAAAGTTGGTTCTAGACCATTAGAAATTAGGCAGAAGCTTGAGCATTGCAGTGTTGTGCCATCACCAGAGCTGGTTGTGGAGGTCCTTTCAAGAACTCGCAATGATTGGGAAGTGGCTTTCACTTTTTTCTTGTGGGCTGGCAAACAACCAGGGTATGCTCTTTCGGTTCGTGAATACCATTCTATGATCTCTATACTTGGCAAAATGAGGAAGTTTGATACTGCTTGGAACTTAATTGAGGAGATGAGAGGAGGTAGATCGGGTCCATCTCTTGTTACTCCACAGACACTGTTGATAATGATAAGAAAATACTGTGCTGTACATGATGTTGCAAGGGCCATCAATACTTTCTATGCTTTTAAACGGTTTAACCTTCAAGTTGGGCTTGAGGAATTTCAAAGCCTTCTTTCTGCCCTTTGTCGCTATAAGAATGTGCAAGATGCCGAGCACTTGTTGTTCTGCAACAAAAATGTATTCCCATTTGACACCAAAAGCTTTAACATCATTCTTAATGGATGGTGTAATTTGATTGTTAGCACCAGTAATGCAGAAAGAATATGGCAGGAAATGGCCAAGAGAAGAATTCAACACGATGTTGTCTCCTATGGGAGTATCATGTCTTGCTATTCAAAATCTTCTAAACTTTACAAGGTGCTCAGGATGTTTGATGAGATGAAAAAAAGGAAGATCACTCCAGATAGGAAGGTTTATAATGCAGTCATTTATGCTCTAGCAAAGGGTAGGCTTGTGAAAGAAGCTGCCAATCTCGTTGGAACAATGGAAGACAATAACATTATTCCGGATGTTGTTACTTACAACTCCCTGATCAAGCCTCTCTGCAAAGATCGCAAAGTTGATGTAGCTAAACAATTTTTTGATGAGATGTTGAAGCGGCACCTATCCCCAACAATTCAAACTTTTCATGCATTTTTCCGTATATTGAGGACTAAGGAAGAAGTATTCGAGCTCTTGGATAAAATGAAAGAGCTGGGATGCTACCCAACCATTGAGACTTACATAATGCTCATAAGAAAGTTTTGCCGATGGCGCCAGCTTGAAGATGTATTTAAGTTATGGGATGCAATGAGGGATGATGGAATTGGCCACGATCGTAGTTCATATATAGTATTGATTCATGGGCTGTTTCTAAATGGAAAGCTAGAGGAAGCACACAGGTATTATGCAGAGATGCAAGAGAAAGGTTTCCTTCCTGAACCAAAGACAGAAGAAATGCTGCAGGCATGGTTTTCTGGGAAACAGGCAGCAGAGGGTCAGATGACAGATTTAGAACCTAATCAACTGGAAAATGATACTCTTAAAAAGAAAGTGAAGGATATACCCAGTAAATATAATAGGGAAAAAACTTTTCTTCGCCAACCTGAAACCAGAAGAGTAACAAGAGAACGTGGTTTTTCTCTCTGGGAGGAGTAA 1815 0.3978 MIRIRSNLPLFSVMLLRIGHNSLAVNHCNIVEQSLMSASFNFFNPFKSETFLAPPQFGFSVWSFSTSSSTRSLGGSTDCPTHEALSDNDDNNEDEDDVDCHKSKDKNCTHLRDAGLAQDVKTILDMIHKVGSRPLEIRQKLEHCSVVPSPELVVEVLSRTRNDWEVAFTFFLWAGKQPGYALSVREYHSMISILGKMRKFDTAWNLIEEMRGGRSGPSLVTPQTLLIMIRKYCAVHDVARAINTFYAFKRFNLQVGLEEFQSLLSALCRYKNVQDAEHLLFCNKNVFPFDTKSFNIILNGWCNLIVSTSNAERIWQEMAKRRIQHDVVSYGSIMSCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAANLVGTMEDNNIIPDVVTYNSLIKPLCKDRKVDVAKQFFDEMLKRHLSPTIQTFHAFFRILRTKEEVFELLDKMKELGCYPTIETYIMLIRKFCRWRQLEDVFKLWDAMRDDGIGHDRSSYIVLIHGLFLNGKLEEAHRYYAEMQEKGFLPEPKTEEMLQAWFSGKQAAEGQMTDLEPNQLENDTLKKKVKDIPSKYNREKTFLRQPETRRVTRERGFSLWEE 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01124 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Pste5g01124 604 Gene3D Tetratricopeptide repeat domain 306 409 IPR011990 GO:0005515
Pste5g01124 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Pste5g01124 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Pste5g01124 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Pste5g01124 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 79 437 - -
Pste5g01124 604 Pfam PPR repeat 187 211 IPR002885 -
Pste5g01124 604 Pfam PPR repeat 466 495 IPR002885 -
Pste5g01124 604 Pfam PPR repeat 501 530 IPR002885 -
Pste5g01124 604 NCBIfam pentatricopeptide repeat 187 211 IPR002885 -
Pste5g01124 604 NCBIfam pentatricopeptide repeat 501 532 IPR002885 -
Pste5g01124 604 NCBIfam pentatricopeptide repeat 364 397 IPR002885 -
Pste5g01124 604 NCBIfam pentatricopeptide repeat 466 495 IPR002885 -
Pste5g01124 604 NCBIfam pentatricopeptide repeat 398 431 IPR002885 -
Pste5g01124 604 NCBIfam pentatricopeptide repeat 328 361 IPR002885 -
Pste5g01124 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Pste5g01124 604 Gene3D Tetratricopeptide repeat domain 410 589 IPR011990 GO:0005515
Pste5g01124 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Pste5g01124 604 Pfam PPR repeat family 395 439 IPR002885 -
Pste5g01124 604 Pfam PPR repeat family 326 374 IPR002885 -
Pste5g01124 604 MobiDBLite consensus disorder prediction 72 99 - -
Pste5g01124 604 Gene3D Tetratricopeptide repeat domain 151 304 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01124 Pste-Chr5 7362169 7363983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01124 187 544 Glycosyltransferase AT1G05670 27.198 7.34e-32 129