Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01107 GCAGCAAAAATGGAGGATTGGATTTCTCATTTGGTAAAAAAGGGTCCCTTAGCATAGTTGATATGAGTATGTTGAAGTTGATGGGTGCATAAACTTATTTTTGTTGTTAGTTGTGACAGGAAATGGAAGAGTATGATTTGGTGGTGGGTGAAAGGCATGAAGATGAGTTCCTAAGAGAGATCCTTGGTGGTGGAACAAGCAGCAGCAGCAGCAGCAGCAACAGCGATGTCAAGTCATTTAAAAGATCCTCAATTGTGTTCTCTCCAGCTCCACCCACCCCATCTGCATTCCTGCTGTCTTTTGATACCTCAACTGCTGAACCAATCACACACTCAGATTTGGTGAAAGAGGGATTTGAGGTTGAGGTTGAGGTTGAGGTTGACCCATTCCTGGCCCAACCCCAACCAAGGAAAAAGGTTAGAAAGCCATGTGAGACTCAGCATCACATCATTGCTGAGAGGAAAAGAAGACAGGAGCTCACAGGGAGCATCATAGCACTTTCAGCCACTATTCCTGGACTCAAGAAGATGGACAAAGCTTATGTACTTAGTGAAGCTGTGAATTATACAAAACAACTTCAAGAACGAGTTAAGGAACTGGAAAATCAAAGCAAATATAAAAGAGTAGTAGATTCAGCAACATTGATAAGGAAAGCTAAAGTCTCCTCAAATAAAAGCAGCATCAATTGTGAGATGAACGAATCACTGTTTGAGGTAGAAGCAAGAGTCCTAGATGAGGAAGTGCTCATTGGAATCCATTGTGAGAAGCAAAAGGACATAGTGTTAAAAATACATGAAATGCTTGAAAAGCTCCATCTTTCCACGACCAGTAGCAGCGTATTACCATTTGGAACTTCTACTCTTATAATCAACATTATTGCTCAGATGAATGACAAATACATCATGTCCATATATGATCTAGTGGAAAAGCTGAAAGAATATCTGTTGGAGGAGTATGACATGCAACACTGAAATAGTGATCCGTGCTAGTGCATGAAATTGAAGTTCTTGGCTTGTATAACTTAGAAAAAAATAAAAATCTCGTACTGTACTTTTTTATGGACTGAGGATAATTTGAGAACCTGTTGCACTTTGGTGGTTGGGTTTATTTTCATTGCTGCA 1121 0.4005 MEEYDLVVGERHEDEFLREILGGGTSSSSSSSNSDVKSFKRSSIVFSPAPPTPSAFLLSFDTSTAEPITHSDLVKEGFEVEVEVEVDPFLAQPQPRKKVRKPCETQHHIIAERKRRQELTGSIIALSATIPGLKKMDKAYVLSEAVNYTKQLQERVKELENQSKYKRVVDSATLIRKAKVSSNKSSINCEMNESLFEVEARVLDEEVLIGIHCEKQKDIVLKIHEMLEKLHLSTTSSSVLPFGTSTLIINIIAQMNDKYIMSIYDLVEKLKEYLLEEYDMQH 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01107 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 166 IPR036638 GO:0046983
Pste5g01107 282 SMART finulus 109 158 IPR011598 GO:0046983
Pste5g01107 282 PANTHER BHLH TRANSCRIPTION FACTOR 28 275 - -
Pste5g01107 282 Gene3D - 96 167 IPR036638 GO:0046983
Pste5g01107 282 Pfam Helix-loop-helix DNA-binding domain 106 153 IPR011598 GO:0046983
Pste5g01107 282 Coils Coil 142 162 - -
Pste5g01107 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 152 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01107 Pste-Chr5 7243317 7246351 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01107 91 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.691 9.78e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g01107 HLH 2.8e-07 No_clan