Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01106 ATGCCTGTCCACGCGCTACCAATTCCCAACGACTCTTCATCGCCGCTCTCCAAGCCCAGACCCAAGCCCAAGGAGGCCCACTTCAGAGGCGTACGCAAGCGTCCCTGGGGACGCTTCGCTGCCGAGATCCGTGATCCCTGGAAAAAGACCCGAAAGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCAGGGCCTACGACACTGCCGCCAGAACATTACGTGGGCCCAAGGCCAAGACCAACTTCGCCTATGTTGTCGCCCCCGCTCTGCACATCCCTCACGCGGTGCTTGCTGCACCTGAAGTCCAAGCCCAGGCCCAGGCCCATGTCCACCACCAACTCGCCCGACAGGCCGACTTCTGGGGCCCACCGTTGTTCTTCGCCACGAACGTAGCTTCCGTCGCGCCGGTGAGGTCGGAGTATAAGGGGTACAAGTTGGAGAATATTGCGGGTTTTGTGGTGGGCAATGAAGATCGGAAAGAGAAGAAGCCGTTTTTGTTCGACCTTAACCTGCCGGCGCCGCTGTTCTGA 534 0.6086 MPVHALPIPNDSSSPLSKPRPKPKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFAYVVAPALHIPHAVLAAPEVQAQAQAHVHHQLARQADFWGPPLFFATNVASVAPVRSEYKGYKLENIAGFVVGNEDRKEKKPFLFDLNLPAPLF 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01106 177 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Pste5g01106 177 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Pste5g01106 177 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Pste5g01106 177 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Pste5g01106 177 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Pste5g01106 177 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Pste5g01106 177 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Pste5g01106 177 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Pste5g01106 177 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 107 - -
Pste5g01106 177 MobiDBLite consensus disorder prediction 1 28 - -
Pste5g01106 177 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01106 Pste-Chr5 7239823 7240356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01106 24 83 AP2-EREBP Transcription Factor Family AT5G44210 88.333 5.04e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste5g01106 AP2 2.3e-13 CL0081