Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01102 ATGGTTGTGGCTAGGCAAATTTTCGGTGCTCGTGTTGTTGTTAGTTTCTTTCTGCTGATTCTTTGTGGCATGGTCTGTGGGACTGACAGTGATATATTCTGCTTGAAAAGTGTAAAGAGTGCACTTGAGGACCCCTATAATTATTTGCAGTCCTGGAGTTTCAACAATGAAACAGAAGGGTATATATGCAAGTTTACAGGGGTTGACTGTTGGCACCCAGATGAGAACAAGGTCTTGAATCTCAAACTGTCCAACATGGGACTCAAGGGCCAGTTTCCTCGCGGCATTCAAAATTGCTCATGCATGACAGGATTAGATTTTTCGCTTAACAGACTCTCTAAAACCATTCCAGCTGATATATCCACACTTCTTAGATTTGTGACATCTCTTGATCTATCTTCAAATGATTTTACTGGGGAAATACCCGCATCCCTTTCAAACTGTACCTATCTTAATAGTCTTAAACTTGACCAAAATCAACTCACCGGTCAAATTCCTGCAAACTTGAGTCAGCTCCCACGGCTTAAGTCATTTAGTGTTGCCAATAATCTATTGACAGGGCAAGTTCCGTCCTTTAAACAGGGTGTGGCTACTGCAGAAAGTTATGCAAATAATTCAGGCCTGTGTGGTCCTCCCTTGGAGGCTTGCCAGCCCAAGTCTTCAACGAGTAACACTGCTGTTATAGCTGGAGCAGCTGTTGGTGGTGTGACTGTTGCAGCATTAGGTTTGGGCATTGGAATGTTCTTCTATGTGCGCCGTATTTCTTATAGGAAGAAGGAAGAGGACCCTGAAGGAAACAAGTGGGCAACAAGTCTAAAGGGAACTAAACAGATAAAGGCAAGCTATATTGATGCGTGGCATATATTTTTTATTGTTTCTACATTTGAGAAGGCAGTTTCAAAAATGTACTTGAAGGATCTCTTGAAGGCTACTAATAACTTCAGTAAAAGCAATATTATTGGGTCTGGGAGATCAGGGACTGTTTACAAAGCTATCCTTAATGATGGCACATCACTCATGGTTAAGAGATTGCAGGAATCTCAACACTCAGAGAAAGAATTTCTGACTGAGATGTCTACACTAGGGTCTATCAAACATCGTAACTTGGTTCCTCTTTTAGGTTTTTGCACAGCTAAAAAGGAGAGGCTCTTGGTCTATAAAAACATGCCTAATGGTACCCTCCATGATCAACTGCATCCTGATGCTGGTGTATGCACCATGGATTGGCCTCTAAGGCTCAAAATTGCAATTGGAGCAGCCAAAGGATTAGCATGGCTTCATCATAGTTGCAATCCTCGTATTATCCACCGAAATATAAGCTCAAAGTGCATCTTGTTGGATGCTGATTTTGAGCCCAAAATTTCTGATTTTGGCCTTGCTAGATTGATGGACCCAATTGATACACATTTGAGTACTTTTGTGAATGGGGAATTTGGGGATTTAGGTTATGTTGCTCCTGAATATACAAAAACTTTGGTGGCTACTTCTAAAGGGGATGTTTATAGCTTTGGGACTGTGCTTCTTGAGTTGGTGACGGGTGAAAGACCTACTCATGTGGCTAAAGCTCCAGAAACTTTTAAAGGAAATTTGGTAGAATGGATTACACAACAATCTAGTAATGCAAAACTCCATGATGTTATTGATGAATCACTAGTTGGTAAAGGTGCAGACCAGGAACTTTTCCAATTTCTGAAGGTTGCATGCAACTGTGTTACAGCAATGCCAAAGGAGAGGCCTACTATGTTTGATGTATACCAGCTTCTAAGAGCCATCGGGAGTAATTATAATTTCACAATTGAGGATGAAATCATGCTGCCTATGGACACTGGTGATGCTGATAACTTAGAAGAACTTATTGTAGCTCGAGAGGGACTTGATGGTAAAGGTATGTGA 1893 0.412 MVVARQIFGARVVVSFFLLILCGMVCGTDSDIFCLKSVKSALEDPYNYLQSWSFNNETEGYICKFTGVDCWHPDENKVLNLKLSNMGLKGQFPRGIQNCSCMTGLDFSLNRLSKTIPADISTLLRFVTSLDLSSNDFTGEIPASLSNCTYLNSLKLDQNQLTGQIPANLSQLPRLKSFSVANNLLTGQVPSFKQGVATAESYANNSGLCGPPLEACQPKSSTSNTAVIAGAAVGGVTVAALGLGIGMFFYVRRISYRKKEEDPEGNKWATSLKGTKQIKASYIDAWHIFFIVSTFEKAVSKMYLKDLLKATNNFSKSNIIGSGRSGTVYKAILNDGTSLMVKRLQESQHSEKEFLTEMSTLGSIKHRNLVPLLGFCTAKKERLLVYKNMPNGTLHDQLHPDAGVCTMDWPLRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMDPIDTHLSTFVNGEFGDLGYVAPEYTKTLVATSKGDVYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWITQQSSNAKLHDVIDESLVGKGADQELFQFLKVACNCVTAMPKERPTMFDVYQLLRAIGSNYNFTIEDEIMLPMDTGDADNLEELIVAREGLDGKGM 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01102 630 Gene3D Transferase(Phosphotransferase) domain 1 389 605 - -
Pste5g01102 630 FunFam Leucine-rich repeat receptor-like protein kinase 28 191 - -
Pste5g01102 630 CDD STKc_IRAK 320 588 - -
Pste5g01102 630 SUPERFAMILY L domain-like 29 194 - -
Pste5g01102 630 Gene3D Phosphorylase Kinase; domain 1 279 387 - -
Pste5g01102 630 CDD TM_EGFR-like 221 259 - -
Pste5g01102 630 Pfam Protein tyrosine and serine/threonine kinase 317 587 IPR001245 GO:0004672|GO:0006468
Pste5g01102 630 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Pste5g01102 630 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 25 191 - -
Pste5g01102 630 ProSiteProfiles Protein kinase domain profile. 314 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g01102 630 FunFam Leucine-rich repeat receptor protein kinase MSP1 287 388 - -
Pste5g01102 630 Gene3D Ribonuclease Inhibitor 92 225 IPR032675 -
Pste5g01102 630 Gene3D Ribonuclease Inhibitor 28 91 IPR032675 -
Pste5g01102 630 SUPERFAMILY Protein kinase-like (PK-like) 296 588 IPR011009 -
Pste5g01102 630 FunFam Leucine-rich repeat receptor-like protein kinase 389 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01102 Pste-Chr5 7224026 7226247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01102 17 602 Receptor kinase-like Gene Family AT3G28450 44.351 1.82e-176 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Pste5g01102 PK_Tyr_Ser-Thr 1.4e-39 CL0016