Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01080 CCACGCCCAAACGCTACCCCTCCTTAAACGTCCCCTTGTCCTGCCCCTGCCCCTATACCATAGTACATTAGTACCCCCACACCCCCTATCTTTCACTATTATTGCCACACACCAAACAAATAGCTGAATGCTTAGAGAGAGAAAGATAAGTGATAAAGTGATAGAGCATATAAGAGAGTGAAAACTCATGGAGGTTGGCCTCAAGAACGAGAACATGGGGTTTGAGGAAACTGAGCTAAGGCTTGGACTGCCTGGAAACGCAGCCTCTGAGGAAGTGCTGAGGAAGAGAGGTTTCTCTGAGACTCAAACTCAGGATCACTCTTCCACTGTCGATTTGATGCTCAATCTTTCTTCTAAGGAACCTACCACTGGACCAGATCCAACTCATAACCACAACCCTTTGCCTAAGGACAACACCCTTCTACCAGCAGATCCTGCTAAGCCTCCTGCCAAGGCACAGGTGGTGGGTTGGCCACCTGTGCGGTCCTTCCGGAAGAACATGTTAGCTGTGCAAAAAAGCGTTGGAGAAGAGAGTGAGAAGAACAGCAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCGAGAACTTTCTGATTCTTTAGGCAAAATGTTCAGTTCCTTCACAATTGGCAATTGTGAATCCCAAGGAATGAAGGATTTCATGAACGAGAGTAAGCTGATGGATCTTTTGAACAGCTCTGATTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCGTGGGAGATGTTTGTTGCATCATGCAAGCGTTTACGCATCATGAAAGGAAAGGAAGCTATTGGCCTTGGCCTTGCACCAAGAGCCATGGCAAAATGCAAGAACAGGAGCTAGGCTAGTTGCACAGTTCATGACCTGGTCCATCCTTTGTAATTGTGGTGTGCCCAGTTGGCTTAGTAACTAAAGTAAGGATAAGCTGCAGCAGACACGGATGGACATAGCAGGGTGTTGATCAATTATAGTTAATTTGTGTATCATTATGGTTTGTTATATGATATTTCAAACAAAACAATGAGATGCATGTCTAATTAAGTACTAATTATGAACAGAAACATAATGACTCTCAATTATGTTGTTAGACTTGGCTTTCTTATATATTTTTGCTTGTTCTGTGTGAGTGCTTGCTTAATAATAATTATAAGAATGTGTTTGTCTGTTGTAGTTGTAGCGACATATATCATCATGCTTTACATTTAAAATTGTC 1292 0.4342 MEVGLKNENMGFEETELRLGLPGNAASEEVLRKRGFSETQTQDHSSTVDLMLNLSSKEPTTGPDPTHNHNPLPKDNTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVASCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01080 244 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 229 IPR003311 GO:0005634|GO:0006355
Pste5g01080 244 MobiDBLite consensus disorder prediction 40 73 - -
Pste5g01080 244 MobiDBLite consensus disorder prediction 34 78 - -
Pste5g01080 244 FunFam Auxin-responsive protein 119 235 - -
Pste5g01080 244 Pfam AUX/IAA family 14 231 IPR033389 -
Pste5g01080 244 Gene3D - 118 235 - -
Pste5g01080 244 ProSiteProfiles PB1 domain profile. 124 224 IPR000270 GO:0005515
Pste5g01080 244 SUPERFAMILY CAD & PB1 domains 115 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01080 Pste-Chr5 7098038 7101929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01080 117 227 B3 DNA Binding Superfamily AT3G61830 33.333 2.29e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste5g01080 AUX_IAA 1.2e-82 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01080 5 7098038 7101929 Pste5g01080 5 7098038 7101929 ECH