Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01072 CATCTTTTTCCCTTCATCAATCAATCTCTTTGCCTACACCTTTTATATATACGCAAATCTCCCTCTCACCCTCGCAATTCACAAATCACAATTCAGCAGCAGCTGCTTTAGCTTTTGGATTCGGAATTGAAGCCCATAATTTGTGAGAAGAATATATACATTGTGCAAAGGTCATCAACTAATTAATTCAGAATTCCATGGGGAGCTTTCAAACTGAGCTGAATCTTAAGGCCACTGAGTTGAGGTTGGGGTTACCTGGCTGTGATGATGAGACTCAGAAAACTTCATTCGCTGCCTCTATTGTTAGAAGCAACAAGAGATCTTCACCAGAACCCAGTGTGGAAGAATCCAACATTAACATTAACTCCGATCATGGTTCTGATTCCACAACCACAAGTGACCATGATGATCAGGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCCTTTAGGAAGAACAGTCTGCAACAGAAGAAGGTGGAGCAGGGTGATGGAAGTGGAATATACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAAGTTTACAAGAGCTACCCAGAACTCCTCATGGCCTTGCAAAGTTTGTTCAAGTGCACATTTGGTGAATATTCCGAAAGGGAAGGATACAATGGGTCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTATCCTCCTGCAAGAGGCTGAGAATAATCAAAGGATCTGAAGCAAAAGGGTTGGGATGTTTATGACCGACAAAACCAAAAACAGGATAGTCATGAGATGTCCGAGGCAATACCCTTTGTGTTGTTCAAGCAAGTACATGGCGTTTACCAGAATCATATATACTTTATCAGAAACTTAAATACATCGATCTTATTTGTATACACTATTTTTCCTTTATTAATTTCTATATAGGGAGGCTGCTTTGAGGCATGCTTCCTTAATTGTATGCACTCCACTAAGAAAAATGCTACCAGAATGGAAAGCAAATAGATCAACACTCCAGAGAAAGAAAGCTGATTCTATTTCAATTGTACAGAATATTATAATGAATCTCATTTTGTCCTAGCAGATCTGCTTATAGACATGCATGTTCTTTCGATAAAGCTA 1173 0.4032 MGSFQTELNLKATELRLGLPGCDDETQKTSFAASIVRSNKRSSPEPSVEESNININSDHGSDSTTTSDHDDQDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGSGIYVKVSMAGAPYLRKIDLKVYKSYPELLMALQSLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGLGCL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01072 204 ProSiteProfiles PB1 domain profile. 108 200 IPR000270 GO:0005515
Pste5g01072 204 FunFam Auxin-responsive protein 103 204 - -
Pste5g01072 204 Gene3D - 103 204 - -
Pste5g01072 204 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 199 IPR003311 GO:0005634|GO:0006355
Pste5g01072 204 MobiDBLite consensus disorder prediction 35 62 - -
Pste5g01072 204 Pfam AUX/IAA family 13 202 IPR033389 -
Pste5g01072 204 SUPERFAMILY CAD & PB1 domains 104 192 - -
Pste5g01072 204 MobiDBLite consensus disorder prediction 35 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01072 Pste-Chr5 7069070 7070525 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01072 99 201 B3 DNA Binding Superfamily AT2G46530 34.951 8.23e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pste5g01072 AUX_IAA 6.6e-59 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01072 5 7069070 7070525 Pste5g01072 5 7069070 7070525 ECH
Pste5g01072 5 7069070 7070525 Pste4g02050 4 15021475 15024646 PCT