Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01063 GATAACTAAAACTATCGTCGACGCTTGACGATTGACGCTTGTTCCTTTTAAGGGTTTTGCGTTCCCTTTTCCCTCTTTCTCCTGTCTTCACCATTTTCCCTATCTTTTTCACATTCTAGTTTTCATCTCGCCTTCAACCCTTCTTTCGTCTTCTGCAATTTAGGGTTTTATTTCAATTTTTGGTATTTTTTATTTGGGAATCTTCTTTCTTCGATTTCCGACAATAAATCTGCGACCAATGCCTCCCAGAGTAGTGAAGAGAGGTGCTGCGGCGAAGAGGGCTTCGAGGGGATCCTCAAAGGCTGCACAAGAGACCCGGCATGAACCTGAAACTGCGCAAGTGGTTGTGAAAAACGACGAACAAAATTCTGTCGTCGACGCCGTGGTGGAAGAGAAGCCTGCTGACCTGGGGCCAGAACCTGAGGAAGTGCCAAATGGGTCGGCTAAGGTGGAAAAAATTGAGGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAGGATGAACACTTAGATTTGGAGGATAATCCTGAGTATGAACCAGAGGAGTATGGCGGCGTTGACTATGATGAGAAGGAAATTGAACAAGATGAAGGTCAGGAAGAGGGAGATGAAGTAGAGGAAGATCTTGAAGAGATTGTAGCTGAAGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTACGAAGAAGTTGAAGATGATGATGATGAGCAGCATGCTGGAGAGGAGCATGAGCATGAGGAGCATGCACAGATACCTGACGTGGATGAAGAGGAGCACCGTGAAGTTGTAAAGGAGAGGCGAAAGCGGAAGGAATTTGAAGTTTTTGTTGGTGGTCTAGATAAGGAAGCTACGGAGCATGATCTGAAGAAGGTTTTCAGTAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCTAACTAAAAGGAACAAGGGATTTGCTTTTTTGCGCTTTGAAACGGTTGAGCAAGCCAAAAGAGCTGTGGTGGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGCGGTGTAACTCCTAGTCAGGACAGTGATACTCTCTACTTAGGTAACATATGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAACTGAAACATTATGGAGTAGAAAATTTGGAGGATTTAACTTTAGTAGAAGATGATGCCAATGAGGGAATGAACCAAGGATTTGCATTTCTGGAGTTTTCATCTCGTTCAGATGCTAAAGAAGCCTATAGGCGACTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCTAAGGTTTCCTTTGCTGACTCATTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCACTGCCTCCTTCATGGGATGATGATTATGTCCGGGGTCTTCTTAAGAAATATGGAGAGATTGAAAAAATTGAACTTGCTAGGAACATGCCAGCTGCTCGGAGGAAGAATTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGAAAGTATTACTAGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCACGACCTCTTTCAAAACCTATTCAGAGAAGCCGTGGAAAACATGTTAATCATGGGAACTTCCGTTCTGGCCGTAATTCTGGAAGATTGATAAGGTCATCACGGAGTCGACCTGCACCTCGTATTCTTCCTGCCCGTGTGGTGAGAGGAGTAGGAAGCCGTGTTCCACCAGTTAGACCTGTTAGTTTGGGAAATAGACGTCCTGTCTCATCCATGCTAGAAAGAACCAGGCCAGTGGCTCCTCCAACTAGAAGCTATGACAGGAGATTGACTGCTCCTGCATATCCAAAAGGTGGTGTGAAAAGAGATTATAATCGACGTGAAGATCTACCACTTCCGAGAAGTAGAGTTGCTGCAGATTATGGCTCTAGGGTAGCCTCTCAGAGGCACACATCATATAGGGATTATCCTTCCCGTGGCTCTGACTATCCTGAACTACATAGAAGTACATCTCGTCCTGCACCTAAGAGAGCTTATGTTGATGATGGCTATGGTCAAAGATTTGAGAGGCCTCCTCCTCCTCCTCCCCATATAAGTTACCGTGAAGGACACCCCCGTGATTATGACACTCTATCTGGCTCAAAACGTCCTTATACTGCTATAGATGATGCTCCTCCTCGGTATGATTCTAGTGCTCGCCAATCAAGATCTCGTTTAGACTATGACTATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGACAGACTTGGAAGATCTAGCCTTGCATATAGTGGTGGCAGATCTTCTATTTCTAATCAAGATTTACATCGGACGTATGGCAGTCGACAAGGCATGAGTTATGGCGGAGTGACAGTGGTGTGTACTCATCAAGTTATGGTAGTGATTATGTATCCCGTGGAAGTGATGTTGGTGGTCGTTCATATTCATCCTTGTATTCTGGCAGAGGTGTGGGTGGTAGCAGCAATTATATGGGTGGTGGTGGATCTGGGTCTTATTATTGAGAGATTTCTCTACCCTCGGATGGCATCTCCATATTTTTCCATAAGGGATGACTGGCGAAGATTGAACACCTGGTCACTAGTGAATTTGTCTATGAACAGATCTAAATACAATAAAGAGGCTGCTGCTCCCTTATGGGTGGGTAATGTGAAAGATCATCCGTATCCTGTTCATCTGGAAAGAACAGGGCCCTGGATATTACTTTTTGATTACGGATTATTGGATTTTTTCCTGCTATTTTTTCTTTTTGCGATGCAATTATTTTTTAAGCACTTCATCACTATCCAATCCAATTGCGTAATATCGGAAGATCATTTACCCTTATCCTATATCAAGACCATTTGCCCTTATGCTATATCATCCGACAAAGCAACTTTACGAGATTGTAAAGTAGCTGAAATGGATTCTATATCATCTTTGGGTAGAAATACTTTTAAAGTATTGATGCTTGGAGTCTTAAAACAAGCACTGGAAGCTGATGCCTGTGAAATGAGAATATTAGATTATGACTTCATACGAAATTATGTGCTCTTTTCTGCATTGCAGGGTGTTGTCCCGCATGAGTTTATGTTTCAAGCCTGCAATACTTTATCTAAAATTGACCATGAGATAAGAAAAACAGGAGTATTGAAATGGCCAAGTACCAAGATTTTGTGTATATATTTGGATATCAATTCGAATACGGATGAATCTGACAATTTACTTTAA 3265 0.423 MPPRVVKRGAAAKRASRGSSKAAQETRHEPETAQVVVKNDEQNSVVDAVVEEKPADLGPEPEEVPNGSAKVEKIEEEVKESIDEYEKDEHLDLEDNPEYEPEEYGGVDYDEKEIEQDEGQEEGDEVEEDLEEIVAEEEGDTGDEEVEYVYEEVEDDDDEQHAGEEHEHEEHAQIPDVDEEEHREVVKERRKRKEFEVFVGGLDKEATEHDLKKVFSKVGVVTEVRLMINPLTKRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENLEDLTLVEDDANEGMNQGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDDDYVRGLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHAAAVECAESITSAGLGEGDKKAKVRARLSRPLSKPIQRSRGKHVNHGNFRSGRNSGRLIRSSRSRPAPRILPARVVRGVGSRVPPVRPVSLGNRRPVSSMLERTRPVAPPTRSYDRRLTAPAYPKGGVKRDYNRREDLPLPRSRVAADYGSRVASQRHTSYRDYPSRGSDYPELHRSTSRPAPKRAYVDDGYGQRFERPPPPPPHISYREGHPRDYDTLSGSKRPYTAIDDAPPRYDSSARQSRSRLDYDYGGSASQYGDAYGDRLGRSSLAYSGGRSSISNQDLHRTYGSRQGMSYGGVTVVCTHQVMVVIMYPVEVMLVVVHIHPCILAEVWVVAAIIWVVVDLGLIIERFLYPRMASPYFSIRDDWRRLNTWSLVNLSMNRSKYNKEAAAPLWVGNVKDHPYPVHLERTGPWILLFDYGLLDFFLLFFLFAMQLFFKHFITIQSNCVISEDHLPLSYIKTICPYAISSDKATLRDCKVAEMDSISSLGRNTFKVLMLGVLKQALEADACEMRILDYDFIRNYVLFSALQGVVPHEFMFQACNTLSKIDHEIRKTGVLKWPSTKILCIYLDINSNTDESDNLL 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01063 1008 MobiDBLite consensus disorder prediction 87 163 - -
Pste5g01063 1008 CDD RRM_SF 374 431 - -
Pste5g01063 1008 SMART rrm1_1 276 355 IPR000504 GO:0003723
Pste5g01063 1008 SMART rrm1_1 196 269 IPR000504 GO:0003723
Pste5g01063 1008 SMART rrm1_1 373 448 IPR000504 GO:0003723
Pste5g01063 1008 MobiDBLite consensus disorder prediction 164 185 - -
Pste5g01063 1008 SUPERFAMILY RNA-binding domain, RBD 274 432 IPR035979 GO:0003676
Pste5g01063 1008 Gene3D - 135 270 IPR012677 -
Pste5g01063 1008 MobiDBLite consensus disorder prediction 1 185 - -
Pste5g01063 1008 MobiDBLite consensus disorder prediction 509 668 - -
Pste5g01063 1008 MobiDBLite consensus disorder prediction 66 86 - -
Pste5g01063 1008 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 359 IPR000504 GO:0003723
Pste5g01063 1008 Gene3D - 364 486 IPR012677 -
Pste5g01063 1008 FunFam Heterogeneous nuclear ribonucleoprotein Q 276 358 - -
Pste5g01063 1008 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 454 IPR000504 GO:0003723
Pste5g01063 1008 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 124 275 - -
Pste5g01063 1008 MobiDBLite consensus disorder prediction 551 565 - -
Pste5g01063 1008 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 273 IPR000504 GO:0003723
Pste5g01063 1008 MobiDBLite consensus disorder prediction 20 35 - -
Pste5g01063 1008 Coils Coil 68 91 - -
Pste5g01063 1008 MobiDBLite consensus disorder prediction 457 483 - -
Pste5g01063 1008 Gene3D - 275 358 IPR012677 -
Pste5g01063 1008 SUPERFAMILY RNA-binding domain, RBD 196 299 IPR035979 GO:0003676
Pste5g01063 1008 MobiDBLite consensus disorder prediction 591 606 - -
Pste5g01063 1008 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 374 432 IPR000504 GO:0003723
Pste5g01063 1008 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 265 IPR000504 GO:0003723
Pste5g01063 1008 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 343 IPR000504 GO:0003723
Pste5g01063 1008 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 24 696 - -
Pste5g01063 1008 CDD RRM_SF 197 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01063 Pste-Chr5 7007339 7013868 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01063 197 467 Eukaryotic Initiation Factors Gene Family AT1G49760 20.270 4.96e-10 61.6