Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01016 GTCTGCAACCGTCATCATCACCCTCTCTTCTGGTTTCTATTATTTACAATACCCAGAGGCATAATAGGACTTATAATTCTCTGCGCATGCATTTTCTCTCTCCCTCTCTTTGTAGCTTCAATTCCAACAAGAGAAGAAAATAGTATGTCAAGTCCTATTTAGGAACTGAGATTCTATTTAGCAAATTAAATATCTTTTGCATGCTGGATTCCTTTCATCAATTCCACTCATACACATTAAGAGAGAGAGAAAAGAGAGATATGTGTCTGAAATAGTTGTGCAGAGTTGCTCAGACAAGCAATCCATGGCTTAGATAGATAGCCACTTCGAAAATAACCCACCACCATCTTCATCTTATATCCTCTCTTCACGAGATTAATTTAGCTTTCTTTTTACCAAAAGAGAATCAATTGTGCATTTCTCTTTCTACATCTGTCTCTGTCTCCCCTCAATAAGCTTTGCACTTGTAGCTTCTTCTTCTTGGTCTGTTCCGAGGTGCAAAAGTGGCTACTTGTGGAACCAAAATAGCAAAGTGCTAGGATTTAGAAAACAAACAAATTATCCGCGACAAGAGAATATAACATCGTATCTTGCTTTTCTTCTTTTCACTCCCGTCCTGTTGGAGGTTTCTTCAAATCCAATATGTTCCCAACCGCTATTTCCAATTCAACTTCTTTGTCCGAAGATGCCAGTGTTTCTTCTGGAACAAAAGTTCAGGACTTTGGAGGACTCAATCACGGGGTCTCAAACATTTATCCTCAGCAACAGCCTCCAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATTGCTTTATCTCCGAAGACCCTTTTGGCCACCAATAGGTTTGTTTGTGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCATAGGAGGGCTCATAACCTCCCTTGGAAGCTGAAGCAAAGGAGCAGCAAAGAGGTCAGAAAGAAAGCCTACGTCTGCCCTGAACCTTCATGCGTTCACCACAACCCCTTAAGGGCCCTGGGGGATCTTACAGGAATCAAGAAACACTACTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCGAAAACTTGTGGTACTAGAGAATATAGATGTGACTGTGGAACCCTTTTTTCCAGGAAGGACAGTTTTATAACTCACAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAATCAAATAGCCACCACAACAAACCCATTTCATTCTCTTTTTCTATTCCAAAACAACCAAGTAACGAGGTTTAACCAATGGGACTCATCTGAACAAAACCCTAACCCTAGCAACGTTGTCACTTCCCTCCACATCAAGCCAGAATCTCAAACTTTCAACAACCCGGTCCTCTCTTCGCTTCTCCAACAGGAACAACCCTCCAACAAGGGCAATATGATAAACTCACCCTTCGGGAACCTACACGTGCCCACAGTACCCTCCCCCAACGCTGCCACGTCAGCATACATGTCAGCTACTGCGCTGCTTCAAAAGGCTGCAACCGTTGGAGCCGCTGCCATCACGGGCTCAGGGCCACAACGTGTAATGGGTCACGTGACTCAGCTCGGTGCGAGTGAGTTCGGAACAGTGAGTCAACTCGACCCGGTGATGCTGGCAGATAATAACTACATGAGAACGTTCCCCACGCGCAGCCTCAAGAGTGACCGTCTCACTAGAGACTTCCTGGGACTAACGGGAGATGCTAACGGCGGAGTTGACGTTAGCACCAACGTGAAGGATATGCATATGCTGACGTTCACGGGGAGTGTAGAGTACGGTCAACATCACCACCACGCGCTTCTCAAACCCCAACAAGGCTTTGGCTTCCTTGGGACAACCACTGCCCCTGAGACGTGGGGGAATTGTTGACACAAATATGAGAATAATTCCAAGTCAGCAGGGTAAAATTGCCAACACACTTTGCCGTAACCCTCACCCTTCACTCTTCCTTTGCTTTTAACTCCTTATATATATATATATATAATTTTTTTTTTCAATTCCCTTCTAGACTTTCAACTTTGTCTTCATTGTTGTTTTCTCAATTTAAATTGAGTACCATGCTTTAGTTCAGTTTTTAATTTACCTGAATATTAATACATTTGGTGCTTTGTTAGTTGCCATGAACTTTGTCTCTGC 2232 0.4364 MFPTAISNSTSLSEDASVSSGTKVQDFGGLNHGVSNIYPQQQPPKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRAHNLPWKLKQRSSKEVRKKAYVCPEPSCVHHNPLRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQIATTTNPFHSLFLFQNNQVTRFNQWDSSEQNPNPSNVVTSLHIKPESQTFNNPVLSSLLQQEQPSNKGNMINSPFGNLHVPTVPSPNAATSAYMSATALLQKAATVGAAAITGSGPQRVMGHVTQLGASEFGTVSQLDPVMLADNNYMRTFPTRSLKSDRLTRDFLGLTGDANGGVDVSTNVKDMHMLTFTGSVEYGQHHHHALLKPQQGFGFLGTTTAPETWGNC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01016 440 MobiDBLite consensus disorder prediction 1 26 - -
Pste5g01016 440 Gene3D Classic Zinc Finger 56 123 - -
Pste5g01016 440 FunFam protein indeterminate-domain 12-like 55 123 - -
Pste5g01016 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Pste5g01016 440 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Pste5g01016 440 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Pste5g01016 440 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Pste5g01016 440 MobiDBLite consensus disorder prediction 1 59 - -
Pste5g01016 440 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 397 IPR031140 -
Pste5g01016 440 Gene3D Classic Zinc Finger 131 209 - -
Pste5g01016 440 SMART c2h2final6 117 147 IPR013087 -
Pste5g01016 440 SMART c2h2final6 76 98 IPR013087 -
Pste5g01016 440 SMART c2h2final6 152 172 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01016 Pste-Chr5 6706154 6710228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01016 15 429 IDZ Gene Family AT4G02670 50.691 2.00e-129 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g01016 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01016 5 6706154 6710228 Pste4g01140 4 8545576 8549296 PCT