Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01009 AAAGTCTGAAACCGTTCCTCTCACGGTCTCAAAGCAATTGATTGAGGATCCCATGAGTTTTCAAGATATCCAAGGTGGGCCCCACCCTCCTTCTCGCCGGAACCAGTCACCCTCGCAGGCCATTGCCGCCGGAATTTTCCAGATCAACACCGCCGTCGCCACTTTCCGGCGACTAGTCGATGGCGTTGGAACCGTTAAAGACACTCCCGAACACCGTCAGAAACTGCATAATACGAGGCAGAGGATACTGCAGCTGGTGAAGGATACTTCCGCTAAGCTCAAAGCATTGAGTGAATCCGATCATGTTAATGTCAATGCTAGTAAGAAAATTGAAGATGCTAAGCTTGCAAGAGATTTCCAAACCACATTGCAAGAGTTCCAGAAAGTACAACAGCTTGCTTCTGAGCGCGAATCTACTTACACCCTTGCTGCCCCTTCTTTACCAACAAGCTCTGGCTCTGGTGAAGAATCTGTTGGGATGGATGTCGAAAGCCAACCTTTTATCAGAGAGCAGAAGAGGCAAGAGATATTTCTATTGGATAATGAAATATCCTTCAATGAGGCCATGATTGATGAAAGAGAACAGGGAATTAAAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTTAAGGACCTAGCTGTTCTGGTTCATGATCAGGGTGTTATTATTGATGACATTGGATCAAATATTGATGCTTCTGCTGGTGCAACAACCCAAGCTAGGGTTCAGCTAGCAAAGGCTTCCAAAAGTGTGAAATCCAAAACCTCATGGTGTTTGTGGGTGCTTGTAATTTTTGTGGTCGTGCTGGTCATCTTACTTATTCTACTCATTTTTTAGTGTGCATAGAAGCCATACAGATTTTTAAACCCATATTTGGTGAGTGTTTTGTGGTGTGAGTGTTTTGTTCAAAAGAAATGTGTTAGAAAGTACCAGAATGTAGTTTGCTATGATCACTTGCATTTGCAGCTGAAAGTTGGAAGACGTTAGTGAGCTTAAGCGATTTTAATAAAAGTTATCATCTATTTGTAATATAGATTTACAGTATAGAATCTGTAGTTGTTGTTTAAACATCAATTCGCAAGCCATTTCCAATTTGTTGGGTAAGTGCCTTCCCTGTGCC 1127 0.4224 MSFQDIQGGPHPPSRRNQSPSQAIAAGIFQINTAVATFRRLVDGVGTVKDTPEHRQKLHNTRQRILQLVKDTSAKLKALSESDHVNVNASKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTLAAPSLPTSSGSGEESVGMDVESQPFIREQKRQEIFLLDNEISFNEAMIDEREQGIKEVEEQIGQANEIFKDLAVLVHDQGVIIDDIGSNIDASAGATTQARVQLAKASKSVKSKTSWCLWVLVIFVVVLVILLILLIF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01009 263 PANTHER SYNTAXIN 22 250 IPR045242 -
Pste5g01009 263 MobiDBLite consensus disorder prediction 1 20 - -
Pste5g01009 263 Pfam Syntaxin-like protein 24 123 IPR006011 GO:0016020
Pste5g01009 263 SMART SynN_4 8 121 IPR006011 GO:0016020
Pste5g01009 263 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Pste5g01009 263 Gene3D - 164 263 - -
Pste5g01009 263 CDD SNARE_Qa 173 231 - -
Pste5g01009 263 FunFam Syntaxin-22 like 15 127 - -
Pste5g01009 263 Pfam SNARE domain 207 258 IPR000727 -
Pste5g01009 263 SMART tSNARE_6 165 232 IPR000727 -
Pste5g01009 263 Gene3D - 13 127 - -
Pste5g01009 263 Coils Coil 173 193 - -
Pste5g01009 263 FunFam Syntaxin-22 like 163 263 - -
Pste5g01009 263 SUPERFAMILY t-snare proteins 19 225 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01009 Pste-Chr5 6674739 6677219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01009 1 250 SNARE and Associated Proteins AT5G46860 59.533 1.13e-97 285
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01009 5 6674739 6677219 Pste5g01009 5 6674739 6677219 ECH