Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01008 ATGAACTACTTGTACCCTGTGAAAGAAGAGTACTTGGAATCACCACCAGCATCATCTTCATCATCACCAACTGGTGCTGTTTATGAGTCAGCAATGGTTGCTCCACCGAGGCCAATGGAAGGGCTTAACGAAATAGGGTCACCCCCATTTCTGACCAAGACTTATGATGCAGTAGAGGACCCCACTACTAGCCACATAGTTTCATGGAGCAGAGGCGGTGCCAGCTTTGTGGTTTGGGATCCACACGCTTTCTCCAAAGACCTTCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTTAGGCAACTAAACACTTACGGCTTTAGAAAAATTGATCCAGATAGGTGGGAGTTTGCAAATGAGGGATTCCTGAGAGGACATAGACACCTGTTGGTAAACATAAGGAGAAGAAAGCAACCTTCTCATCCTTCTTCATCTCAACAAGCACAAGGTCACTGTGTTGAAGTTGGACGTTTTGGACGTGATGAAGAGGTTGATCGTCTGAGGCGTGACAAGCACGTGTTGATGATGGAGCTTGTGAAGCTCAGACAGCAGCAACAGAATACCAGATCCTATCTTCAAGCAATGGAGGAGAAGCTACGAGGAACAGAAATTAAGCAGCAACAAATGATGGCTTTCTTGGCTAGAGCTCTGAAGAACCCCACCTTCATCCAGCAGCTACTACAGCAAAAAGAGAAGAGGAAGGAGCTTGAAGAGGCCATGTCCAAGAAGAGGAGAAGGCCAATTGAGCAAAGGCCTGGTGGGGTTGGAGAATCAAGCAGTGTCAAAGTGGAGCCTCTTGTGTTTGGGGAATACGGTTTTGGAGTGTCAGAGTTGGAAGTGCTAGCTATGGAGATGCAGGGTTATGGTAGGGGCAGGAGGGAACAAGAGGAGGAGCCTGAGGCACTAGAATCACAAGAGAGGCTGGACAAAGAGCTTGATGAAGGGTTTTGGGAAGAACTGTTCAGTGAGGGTTTTGAGGGTGAATTAGATATCCCAACTTCCCAAGACCAAGATGAAGAGGATGTTAATGTATTGGCCAATCGCTTTGGTTACTTGGGTTCAAGTCCTAAGTGA 1083 0.4663 MNYLYPVKEEYLESPPASSSSSPTGAVYESAMVAPPRPMEGLNEIGSPPFLTKTYDAVEDPTTSHIVSWSRGGASFVVWDPHAFSKDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLVNIRRRKQPSHPSSSQQAQGHCVEVGRFGRDEEVDRLRRDKHVLMMELVKLRQQQQNTRSYLQAMEEKLRGTEIKQQQMMAFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEQRPGGVGESSSVKVEPLVFGEYGFGVSELEVLAMEMQGYGRGRREQEEEPEALESQERLDKELDEGFWEELFSEGFEGELDIPTSQDQDEEDVNVLANRFGYLGSSPK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01008 360 FunFam Heat shock transcription factor 1 43 140 - -
Pste5g01008 360 MobiDBLite consensus disorder prediction 292 312 - -
Pste5g01008 360 SUPERFAMILY "Winged helix" DNA-binding domain 47 139 IPR036390 -
Pste5g01008 360 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste5g01008 360 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste5g01008 360 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste5g01008 360 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 36 262 IPR027725 -
Pste5g01008 360 SMART hsfneu3 46 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste5g01008 360 Gene3D - 43 140 IPR036388 -
Pste5g01008 360 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste5g01008 360 Coils Coil 167 201 - -
Pste5g01008 360 MobiDBLite consensus disorder prediction 237 254 - -
Pste5g01008 360 Coils Coil 229 249 - -
Pste5g01008 360 MobiDBLite consensus disorder prediction 237 262 - -
Pste5g01008 360 Pfam HSF-type DNA-binding 50 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01008 Pste-Chr5 6665446 6667227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01008 25 358 HSF AT3G22830 52.926 1.67e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pste5g01008 HSF_DNA-bind 2.7e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01008 5 6665446 6667227 Pste4g02122 4 15506017 15507801 PCT