LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g01008	ATGAACTACTTGTACCCTGTGAAAGAAGAGTACTTGGAATCACCACCAGCATCATCTTCATCATCACCAACTGGTGCTGTTTATGAGTCAGCAATGGTTGCTCCACCGAGGCCAATGGAAGGGCTTAACGAAATAGGGTCACCCCCATTTCTGACCAAGACTTATGATGCAGTAGAGGACCCCACTACTAGCCACATAGTTTCATGGAGCAGAGGCGGTGCCAGCTTTGTGGTTTGGGATCCACACGCTTTCTCCAAAGACCTTCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTTAGGCAACTAAACACTTACGGCTTTAGAAAAATTGATCCAGATAGGTGGGAGTTTGCAAATGAGGGATTCCTGAGAGGACATAGACACCTGTTGGTAAACATAAGGAGAAGAAAGCAACCTTCTCATCCTTCTTCATCTCAACAAGCACAAGGTCACTGTGTTGAAGTTGGACGTTTTGGACGTGATGAAGAGGTTGATCGTCTGAGGCGTGACAAGCACGTGTTGATGATGGAGCTTGTGAAGCTCAGACAGCAGCAACAGAATACCAGATCCTATCTTCAAGCAATGGAGGAGAAGCTACGAGGAACAGAAATTAAGCAGCAACAAATGATGGCTTTCTTGGCTAGAGCTCTGAAGAACCCCACCTTCATCCAGCAGCTACTACAGCAAAAAGAGAAGAGGAAGGAGCTTGAAGAGGCCATGTCCAAGAAGAGGAGAAGGCCAATTGAGCAAAGGCCTGGTGGGGTTGGAGAATCAAGCAGTGTCAAAGTGGAGCCTCTTGTGTTTGGGGAATACGGTTTTGGAGTGTCAGAGTTGGAAGTGCTAGCTATGGAGATGCAGGGTTATGGTAGGGGCAGGAGGGAACAAGAGGAGGAGCCTGAGGCACTAGAATCACAAGAGAGGCTGGACAAAGAGCTTGATGAAGGGTTTTGGGAAGAACTGTTCAGTGAGGGTTTTGAGGGTGAATTAGATATCCCAACTTCCCAAGACCAAGATGAAGAGGATGTTAATGTATTGGCCAATCGCTTTGGTTACTTGGGTTCAAGTCCTAAGTGA	1083	0.4663	MNYLYPVKEEYLESPPASSSSSPTGAVYESAMVAPPRPMEGLNEIGSPPFLTKTYDAVEDPTTSHIVSWSRGGASFVVWDPHAFSKDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLVNIRRRKQPSHPSSSQQAQGHCVEVGRFGRDEEVDRLRRDKHVLMMELVKLRQQQQNTRSYLQAMEEKLRGTEIKQQQMMAFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEQRPGGVGESSSVKVEPLVFGEYGFGVSELEVLAMEMQGYGRGRREQEEEPEALESQERLDKELDEGFWEELFSEGFEGELDIPTSQDQDEEDVNVLANRFGYLGSSPK	360

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pste5g01008	360	FunFam	Heat shock transcription factor 1	43	140	-	-
Pste5g01008	360	MobiDBLite	consensus disorder prediction	292	312	-	-
Pste5g01008	360	SUPERFAMILY	"Winged helix" DNA-binding domain	47	139	IPR036390	-
Pste5g01008	360	PRINTS	Heat shock factor (HSF) domain signature	50	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Pste5g01008	360	PRINTS	Heat shock factor (HSF) domain signature	101	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Pste5g01008	360	PRINTS	Heat shock factor (HSF) domain signature	88	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Pste5g01008	360	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	36	262	IPR027725	-
Pste5g01008	360	SMART	hsfneu3	46	139	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Pste5g01008	360	Gene3D	-	43	140	IPR036388	-
Pste5g01008	360	ProSitePatterns	HSF-type DNA-binding domain signature.	89	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Showing 1 to 10 of 15 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g01008	Pste-Chr5	6665446	6667227	Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g01008	25	358	HSF	AT3G22830	52.926	1.67e-125	365

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pste5g01008		HSF_DNA-bind	2.7e-32	CL0123

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g01008	5	6665446	6667227	Pste4g02122	4	15506017	15507801	PCT

Showing 1 to 1 of 1 entries

Previous1Next