Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00990 ATGGATAATTATTATGTGACTACTACTAGTACTGAATGTGACACGTCACTTTCGGACCTTATTGAAGAATACATGGTTGATGACGAAGCTAATAATGGTTTGGAGAAGAATGATTTGGTGAGAAACGAGAATTGCTTCCCTGGGGAGGCATCAGCTGATGCAAGGGAGGAAGTTCCAAAATGGACGAGGTACAAAGGTGTGAGACGTAGGGCACATGGAAAGTTTGCTGCTGAGATTAAAGACCCAAACAGAAGTGGTAGGATTTGGCTTGGGACTTATGACACTGAAGAAGAAGCTGCTTTGGCTTATGACAATGCAGCTTTCAAGATTAGAGGCTCCAAGGCCAAGCTCAATTTTCCTAACCTCATTCAACCAACGCTGCCTTTCCACGCGCCATCAACTGCTCACATCACTCACCCTCCTTCTTCATCGGATCCTTCTCAAGGATCAAACAAAAGAAAGGGACTGGCTTCTTTGCTCAATAAATTAGCCCATGGAAGAAATACAGTTTGA 513 0.4366 MDNYYVTTTSTECDTSLSDLIEEYMVDDEANNGLEKNDLVRNENCFPGEASADAREEVPKWTRYKGVRRRAHGKFAAEIKDPNRSGRIWLGTYDTEEEAALAYDNAAFKIRGSKAKLNFPNLIQPTLPFHAPSTAHITHPPSSSDPSQGSNKRKGLASLLNKLAHGRNTV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00990 170 PANTHER DNA-BINDING DOMAIN 50 145 IPR044808 GO:0003700|GO:0009873
Pste5g00990 170 FunFam Ethylene-responsive transcription factor 2 62 121 - -
Pste5g00990 170 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Pste5g00990 170 PRINTS Ethylene responsive element binding protein signature 102 122 IPR001471 GO:0003700|GO:0006355
Pste5g00990 170 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Pste5g00990 170 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Pste5g00990 170 MobiDBLite consensus disorder prediction 136 153 - -
Pste5g00990 170 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Pste5g00990 170 CDD AP2 62 122 IPR001471 GO:0003700|GO:0006355
Pste5g00990 170 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Pste5g00990 170 MobiDBLite consensus disorder prediction 130 153 - -
Pste5g00990 170 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00990 Pste-Chr5 6489181 6489693 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00990 64 136 AP2-EREBP Transcription Factor Family AT2G33710 62.667 5.77e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste5g00990 AP2 2.3e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g00153 7 1345102 1345683 Pste5g00990 5 6489181 6489693 PCT