Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00989 ATGGATTCGGATTCAGCATTGTTGGAATGTGTTCAAGAATACCTACTTGGACATGATTCGGTGAATCCCATGCCTGAAGCTGAGCCACACCAAGTTGCATCAGCTGCTGACACGGCACCAACATGGAAGCATTATAGAGGTGTGAGGCGTAGGCCATGGGGGAAGTTCGCAGCAGAGATTAGGGACCCAAAAAAGAATGGAGCTAGGGTTTGGTTAGGGACTTTTGATACAGAAGAGAAAGCTGCTCTTGCATATGATAAAGCCGCTTTCAAAATGCGTGGTCCAAAAGCCAAATTGAACTTTCCTCACCTTATTGATTCCAACAATTTTCATATATTCTTGGAACCAGCAAAGGTCACCACTACCACTTCCAAGAGAAAGTTACCTCAAATTTCTTCTGTACCATCATCATCTCCATTGTCAGACTCAACCCAGACAAAGACTAAGAGGGGAAAGACTCTAGCTCATCTGCTCAATAGGCTAGCCAAGGTTATTGGCTTCAACTACAACACCATTGTCCAAAACATGTCATCCACCACCACACATTCAGAGTGTGCATATTTGGAACACATTCAACAATACCTCCTTCACAGTCACAATGATTCTAGTTCGGATGCAAATGTCCACTCTGAGAACCCTAGGGAAGCGCGTGAAGTGAACGCGCCACCGAAATGGAGGCATTACCGCGGCGTGAGGCGTAGGCCATGGGGGAAGTTTGCAGCTGAGATAAGAGATCCAAAGAAAAACGGCGCTAGGGTTTGGCTGGGAACTTATGCGACCGAGGAGGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGTCGAAAGGCCAAGCTGAATTTTCCTCATCTCATTTGCTCGGAGCCACCAACTGTGGCGGCTTCTAAGCGGAGCTTGCCAGAACCGTCTCCTCCACCATCATCATCGGATGGGGCAAAGAGGAGAAAGAGCTTGGTTAATCTTCTTAATAATTTGGCAAAGAATAGAAGCCAAGCCAAGGTGGTTGAAATGGCCCTCGAGGCAAATCAGATTGACCAATGGGTGAATGAATTGAAAGATTGCACTCTACTCTGGTGCTCCTAG 1092 0.4689 MDSDSALLECVQEYLLGHDSVNPMPEAEPHQVASAADTAPTWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTFDTEEKAALAYDKAAFKMRGPKAKLNFPHLIDSNNFHIFLEPAKVTTTTSKRKLPQISSVPSSSPLSDSTQTKTKRGKTLAHLLNRLAKVIGFNYNTIVQNMSSTTTHSECAYLEHIQQYLLHSHNDSSSDANVHSENPREAREVNAPPKWRHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYATEEEAALAYDKAAFKMRGRKAKLNFPHLICSEPPTVAASKRSLPEPSPPPSSSDGAKRRKSLVNLLNNLAKNRSQAKVVEMALEANQIDQWVNELKDCTLLWCS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00989 363 CDD AP2 43 104 IPR001471 GO:0003700|GO:0006355
Pste5g00989 363 MobiDBLite consensus disorder prediction 200 220 - -
Pste5g00989 363 Gene3D AP2/ERF domain 43 103 IPR036955 GO:0003700|GO:0006355
Pste5g00989 363 Gene3D AP2/ERF domain 226 286 IPR036955 GO:0003700|GO:0006355
Pste5g00989 363 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Pste5g00989 363 Pfam AP2 domain 227 277 IPR001471 GO:0003700|GO:0006355
Pste5g00989 363 MobiDBLite consensus disorder prediction 124 149 - -
Pste5g00989 363 MobiDBLite consensus disorder prediction 295 317 - -
Pste5g00989 363 ProSiteProfiles AP2/ERF domain profile. 44 102 IPR001471 GO:0003700|GO:0006355
Pste5g00989 363 SMART rav1_2 227 291 IPR001471 GO:0003700|GO:0006355
Pste5g00989 363 SMART rav1_2 44 108 IPR001471 GO:0003700|GO:0006355
Pste5g00989 363 CDD AP2 227 287 IPR001471 GO:0003700|GO:0006355
Pste5g00989 363 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677
Pste5g00989 363 FunFam Ethylene-responsive transcription factor 2 226 286 - -
Pste5g00989 363 PANTHER DNA-BINDING DOMAIN 31 143 IPR044808 GO:0003700|GO:0009873
Pste5g00989 363 ProSiteProfiles AP2/ERF domain profile. 227 285 IPR001471 GO:0003700|GO:0006355
Pste5g00989 363 FunFam Ethylene-responsive transcription factor 2 43 103 - -
Pste5g00989 363 SUPERFAMILY DNA-binding domain 227 286 IPR016177 GO:0003677
Pste5g00989 363 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Pste5g00989 363 PRINTS Ethylene responsive element binding protein signature 84 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00989 Pste-Chr5 6471886 6475060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00989 224 306 AP2-EREBP Transcription Factor Family AT2G44840 71.765 9.89e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pste5g00989 AP2 2.5e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00989 5 6471886 6475060 Pste5g00989 5 6471886 6475060 ECH
Pste7g00149 7 1310144 1310812 Pste5g00989 5 6471886 6475060 PCT