Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00962 GAAAGGCTGTTACACACACTGCCACCAAAGACCACCCTTTTTCTTCCCATTTGCCCTCGCCCAAAAATCACACCTTTTTCTTCAACACGCACTCATTGGCTCTTCTCACAAACAAAATGAGTGTGAAAGATGATGACTTTGGCCTCAGTTTGAGTTTGAGTTTAGGAGTAAATCAACAAACTCCTCCTTTCAAGCTCAATCACCACATGCACCACCCTCGACCTCAACCTCAACAACCTGTTCCTGTTCCTCTCAATCATAATAACACTCTCTTTGGTGATTTGTTTCCATTACCAGATCGGAGCTCCGATATTGTACGAGGAATCAACGTAAATTCGGCGGCGGAGTGTGACGAGGAGAACGGCGTTTCCTCGCCGAACAGCGCGGTGTCGAGTGTGAGCGGCGGGAAGCGGGGCGAGAGGGACTATGATAATGCTGCTGCCGCGGCCGGCGAGAGAACCTCGTGCTCGCGGGGGAGTGACGACGAAGATGGCGGTGGCGGCGACGCCGGGAGGAAGAAGCTGAGGCTGACAAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCACAACACGCTGAATCCGAAACGGAAGCAAGCATTGGCAGAGGACTTAAATCTGAAGCCTAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTAAAGAGGTGCTGTGAGAATTTAACTGAAGAGAATAGGAGGTTGCACAAGGAGGTCCAAGAGCTTAGGGCATTGAAATTATCCCCACAAATGTACATGCATATGAACCCTCCAACCACTCTTACCATGTGCCCTTCTTGTGAGCGTGCTCACGCCTCAGCATCCTCCACCCCTGCCACTGTCCACTCGGCGGCGTTGCCGAGTAATCGCCGGCGGCCAGCACCGGTCACCACTTGGCCATTTGATGGCTCAATTCATCGGCCATAATTGGTTCAAGTCATCAATCTGATATTTATGACGGTGTCTAGACATTTTTAGTTACTAGACATATTGCATGGAATGTGAAGAAAAAGAACCAAATTGCAATGGAACGCTAATTTATGGTTTTGTTAATTAGGACTCAAGGATATATATGAGTTTTGGACTTGGTTAACTCTTCAGCGAAGGATTGTTCTATTTTGTGTATGGTATACGTACGTTGTAGTCAATTTCAAGATTTGTTCAGGGTAGATATGTTACCGGTGGGGTAAGGTTTCATATGCCAAATAGTGCAAGCAATTATTAGTTTAGACTTTAAAAAGAAGATAAAGAGAATCCGAATCAGTGATGTTATCGTCAAATTGGGATAGCACTTCCTAGGGAAAAGGTTGGGTGATGGAAGAGGGTTCAACGTGAAGGAATGATTGTGATTTCTCAATTGGAGATTTTTGTCTACTTTGCGTATATGGCATACCACTACAATGTAAATATAAGATAACAACAATCTTTTCTTCAGATTCCATCAAAG 1494 0.4538 MSVKDDDFGLSLSLSLGVNQQTPPFKLNHHMHHPRPQPQQPVPVPLNHNNTLFGDLFPLPDRSSDIVRGINVNSAAECDEENGVSSPNSAVSSVSGGKRGERDYDNAAAAAGERTSCSRGSDDEDGGGGDAGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEDLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLHKEVQELRALKLSPQMYMHMNPPTTLTMCPSCERAHASASSTPATVHSAALPSNRRRPAPVTTWPFDGSIHRP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00962 285 Pfam Homeodomain 133 187 IPR001356 GO:0003677
Pste5g00962 285 MobiDBLite consensus disorder prediction 78 95 - -
Pste5g00962 285 Coils Coil 202 222 - -
Pste5g00962 285 Gene3D - 137 187 - -
Pste5g00962 285 Pfam HD-ZIP protein N terminus 1 103 IPR006712 GO:0005634
Pste5g00962 285 MobiDBLite consensus disorder prediction 252 285 - -
Pste5g00962 285 MobiDBLite consensus disorder prediction 77 137 - -
Pste5g00962 285 CDD homeodomain 133 190 IPR001356 GO:0003677
Pste5g00962 285 SMART HOX_1 131 193 IPR001356 GO:0003677
Pste5g00962 285 FunFam Homeobox-leucine zipper protein 18 118 194 - -
Pste5g00962 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 260 - -
Pste5g00962 285 MobiDBLite consensus disorder prediction 21 41 - -
Pste5g00962 285 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355|GO:0043565
Pste5g00962 285 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Pste5g00962 285 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Pste5g00962 285 SMART halz 189 232 IPR003106 GO:0006355|GO:0043565
Pste5g00962 285 MobiDBLite consensus disorder prediction 117 137 - -
Pste5g00962 285 SUPERFAMILY Homeodomain-like 121 190 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00962 Pste-Chr5 6326309 6329840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00962 1 246 Homeobox Transcription Factor Family AT3G60390 60.432 6.62e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste5g00962 HD-ZIP_N 2.5e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00962 5 6326309 6329840 Pste5g00962 5 6326309 6329840 ECH
Pste7g00133 7 1171822 1176731 Pste5g00962 5 6326309 6329840 PCT