Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00960 ATGGATCTTCGTTTCCTTCTTCGGTGCTTTCTCTTCTTCTTCTTCTTCTTCTTCACTTCGCATAACGCAAATGGCTTCAATGCTTCAATTCCTCGCGACGCATTGTCCCTTCTCAGCTTCAAACGCTTCGTCTCTTCCGACCCTTCCAACCTTCTCGCCGGCTGGTCCAACCGCTCTTCCTCCAATCTCTGCCGCTGGCGCGGCGTCGCGTGCGGCGGTGCCGGGACTCTCTCCGGCAGAGTCACCGCCCTCAACGTCACCGGTCTCCGCGGCGGCGAGTTGTCGCCCTCCGTCGGCGACATGTCCGAGCTCCGCGTCCTGTGCCTCCCCGGAAACATGTTCTCCGGCGAGATTCCGGCGAGCATAGGGAATCTCCGGTTTCTGAAGGTTCTTGAGCTTCAAGGTAACAACTTTTCAGGGAGAGTTATGAACCAGATGAGTTTTGCTTTGCTTCAATCTCTTCAAGTTGTTAATCTCTCTGGTAATGCCTTCTCTGGTTCGATACCAAGTGAAATTATAGGTTCTGGTAATGTGAAAATGGTTGATTTATCGAATAATCAGTTTTCGGGTGTGATTCCAGTGAATGGTAGTTGTGATTCGTTGCAGCATTTGAAGCTATCGCATAACTTTTTGACTGGGGAGATTCCACCCCAAATTGGGGAATGTAGAAACTTGAGGACCCTTTTGGTTGATGGGAATATCTTGGAGGGTAGAATCCCTTCTGAGATTGGGAATATTGTTGAACTTAGAGTCTTAGATGTTTCTAGAAACTCCCTCACTGGAAGGGTCCCTAAGGAGTTGGCTAATTGTGTGAAACTGTCTGTGCTTGTGCTTACTGATTTGTTCGAGGATGGTGATGAGGGAGGCTTGGATGATGGGTTTAGAGGAGAGTTTAATGCCTTTGTTGGGAACATACCTCATCAAGTGTTGCTGCTTTCGAATCTAAGAGTTTTGTGGGCTCCCAGAGCCAATCTTGGTGGACGGTTGCCTAGTGGTTGGTCGGATTTGTGCTCTCTTAGGGTGCTCAATTTGGCTCAGAACTATGTTTCTGGTGTTGTGCCTGAGAGTTTGGGGATGTGTAGGAATTTAAGTTTCTTGGATTTGAGTTCTAACAATTTGGTGGGGTATTTGCCTTCATTGCAGCTTCATGTTCCTTGTATGATGTACTTCAATGTCAGCAGGAATAATATATCTGGTGTTCTAAAAGGTTTTAGGAAAGAAACCTGTGTTGTGAGTGTGCTAGACACTTCATTCCTAGAATCGGATGGTTTTAATGATGCTGCATATTTTAATATTCCTGTTTGGAGGTTTCAAAAGAATGTTTTCATTGGGTTGAGTTTAGAAGAGACTGATGCTATTGTTGTTAGCCATGATTTCAGTTTGAACTGTTTCGTGGGATCCTTGCCTTTATTCTCTCTTGCAGATGAATTTTTTAGTGCAAATCGAAACATCTCCTATTCACTGTCTCTGAATAATAATCAGTTCAATGGAACTCTGCCATATGGGTTAGTTTCAAGCTGTAATGATCTCAAGACATTGTCAGTTAACTTGAGTGTGAATCAACTATCCAGTGGGACTGCCCAAGCACCGTTTCTGGGGTGCCTGAAGTTGACAGATTTTGATGCAGCATACAACCAGATGAATGGATCGATTGGACCTGGTATAGATGACTTGATGATGCTTCAGCGTCTCGATTTAACCGGAAACAAAATATCTGGATCACTGCCTAATCAGTTGGGAAACCTACAAAACATGAAATGGATGCTGCTGGGGGAAAACAATCTAACTGGAGAAATTCCTTCCCAACTTGGCCTATTGACTTCCCTTGTGGTTTTGAATCTGTCTCGCAATGCTCTAGTTGGAAGAATTCCTGCGAGATTGTCAAATGCCAAAAATCTTGAAGCTCTATTGCTAGATCACAACAACCTTTCTGGGGAAATACCTTTAACTTTTTCTACTCTTTCCAATCTTGTTCAACTGGATGTTTCTTTTAACAACCTTTCTGGTCATATTCCTCATCTTCAACACCCAAGTGATTGTGATTCGTATAAAGGAAATGCACACCTGCATTCTTGCCCTGATCCATATTCCGACTCTCCTGCTTCTCTTCCAGTTCCCCTTGAAATCCAGCATACACATACACGGAGGAAATTAAGGACATTGGTTATTGTTGTGGTCGCTTCGGCTTCTGTGGCTCTCTGCATACTTCTGGGAATAGTGTTGTTGATCTTTTCTGGAAAGAGCAAATTTGGTCGGCTTAGCAGTATTAGAAGGCGACAGGTAGTGACCTTTCAAGATGTTCCAACTGAATTGAATTATGACTGTGTGGTTACAGCTACTGGAAATTTCAGCATCCGGTATCTAATTGGCACAGGTGGCTTTGGGTCAACATACAAGGCAGAACTTTCCCCAGGTTTTCTTGTTGCAATAAAAAGGTTGTCCATTGGTAGATTTCAAGGCATTCAACAGTTTGAAACAGAAATACGGACATTAGGCAGAATTAGACACAAGAATCTTGTGACTCTTATCGGCTATTATGTTGGAAAGGCTGAAATGTTCTTAATTTACAACTACCTTTCTGGTGGGAACCTTGAAGCCTTCATACATGACCGGTCAGGGAAAAAAGTGCATTGGCCAGTTATTTTCAAAATAACAAAAGACATAGCAGAGGCCCTTGCTTACCTTCACTACTCTTGTGTTCCTCGCATTGTTCACCGGGATATCAAACCTAGCAACATCTTACTTGATGAAGATCTTAATGCCTACCTGTCAGATTTTGGCTTGGCACGATTGCTTGAGGTATCTGAGACTCATGCCACCACTGATGTGGCAGGCACATTTGGTTATGTTGCACCAGAATATGCCACTACTTGCAGGGTTTCTGACAAAGCAGATGTTTACAGCTTTGGTGTAGTGTTGCTAGAATTGATGTCAGGAAGAAAGTCGCTTGATCCATCATTTTCTGAATATGGAAATGGATTCAACATTGTACCATGGGCAGAGCTGCTAATGACTGAAGGCCGTTGTTCCGAGCTATTTTCATCTACTTTGTGGGAAGCAGGACCTAAGGAAAAATTGTTGGGGCTTTTAAAGCTCGCATTAACATGCACAGAAGAGACTCTTTCTATTAGACCGTCAATGAAACAGGTTCTTGAGAAATTAAAACAGTTGAAAAGTTGA 3180 0.4343 MDLRFLLRCFLFFFFFFFTSHNANGFNASIPRDALSLLSFKRFVSSDPSNLLAGWSNRSSSNLCRWRGVACGGAGTLSGRVTALNVTGLRGGELSPSVGDMSELRVLCLPGNMFSGEIPASIGNLRFLKVLELQGNNFSGRVMNQMSFALLQSLQVVNLSGNAFSGSIPSEIIGSGNVKMVDLSNNQFSGVIPVNGSCDSLQHLKLSHNFLTGEIPPQIGECRNLRTLLVDGNILEGRIPSEIGNIVELRVLDVSRNSLTGRVPKELANCVKLSVLVLTDLFEDGDEGGLDDGFRGEFNAFVGNIPHQVLLLSNLRVLWAPRANLGGRLPSGWSDLCSLRVLNLAQNYVSGVVPESLGMCRNLSFLDLSSNNLVGYLPSLQLHVPCMMYFNVSRNNISGVLKGFRKETCVVSVLDTSFLESDGFNDAAYFNIPVWRFQKNVFIGLSLEETDAIVVSHDFSLNCFVGSLPLFSLADEFFSANRNISYSLSLNNNQFNGTLPYGLVSSCNDLKTLSVNLSVNQLSSGTAQAPFLGCLKLTDFDAAYNQMNGSIGPGIDDLMMLQRLDLTGNKISGSLPNQLGNLQNMKWMLLGENNLTGEIPSQLGLLTSLVVLNLSRNALVGRIPARLSNAKNLEALLLDHNNLSGEIPLTFSTLSNLVQLDVSFNNLSGHIPHLQHPSDCDSYKGNAHLHSCPDPYSDSPASLPVPLEIQHTHTRRKLRTLVIVVVASASVALCILLGIVLLIFSGKSKFGRLSSIRRRQVVTFQDVPTELNYDCVVTATGNFSIRYLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGKAEMFLIYNYLSGGNLEAFIHDRSGKKVHWPVIFKITKDIAEALAYLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSEYGNGFNIVPWAELLMTEGRCSELFSSTLWEAGPKEKLLGLLKLALTCTEETLSIRPSMKQVLEKLKQLKS 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00960 1059 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 859 1059 - -
Pste5g00960 1059 Pfam Protein kinase domain 788 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g00960 1059 SMART serkin_6 783 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g00960 1059 Gene3D Ribonuclease Inhibitor 454 699 IPR032675 -
Pste5g00960 1059 Gene3D Ribonuclease Inhibitor 30 89 IPR032675 -
Pste5g00960 1059 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 454 700 - -
Pste5g00960 1059 FunFam Piriformospora indica-insensitive protein 2 194 282 - -
Pste5g00960 1059 FunFam Nuclear pore complex protein NUP107 30 193 - -
Pste5g00960 1059 Pfam Leucine Rich Repeat 200 220 IPR001611 GO:0005515
Pste5g00960 1059 Gene3D Phosphorylase Kinase; domain 1 745 858 - -
Pste5g00960 1059 SUPERFAMILY Protein kinase-like (PK-like) 761 1054 IPR011009 -
Pste5g00960 1059 SUPERFAMILY RNI-like 87 399 - -
Pste5g00960 1059 SUPERFAMILY L domain-like 302 677 - -
Pste5g00960 1059 ProSitePatterns Serine/Threonine protein kinases active-site signature. 903 915 IPR008271 GO:0004672|GO:0006468
Pste5g00960 1059 Gene3D Transferase(Phosphotransferase) domain 1 859 1058 - -
Pste5g00960 1059 CDD STKc_IRAK 789 1057 - -
Pste5g00960 1059 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 293 413 - -
Pste5g00960 1059 ProSiteProfiles Protein kinase domain profile. 783 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g00960 1059 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 218 1056 - -
Pste5g00960 1059 Gene3D Ribonuclease Inhibitor 293 413 IPR032675 -
Pste5g00960 1059 Gene3D Ribonuclease Inhibitor 90 282 IPR032675 -
Pste5g00960 1059 SMART LRR_typ_2 151 175 IPR003591 -
Pste5g00960 1059 SMART LRR_typ_2 558 582 IPR003591 -
Pste5g00960 1059 SMART LRR_typ_2 336 359 IPR003591 -
Pste5g00960 1059 SMART LRR_typ_2 246 270 IPR003591 -
Pste5g00960 1059 SMART LRR_typ_2 654 676 IPR003591 -
Pste5g00960 1059 SMART LRR_typ_2 606 630 IPR003591 -
Pste5g00960 1059 SMART LRR_typ_2 198 222 IPR003591 -
Pste5g00960 1059 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Pste5g00960 1059 ProSitePatterns Protein kinases ATP-binding region signature. 789 811 IPR017441 GO:0005524
Pste5g00960 1059 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 747 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00960 Pste-Chr5 6305338 6308517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00960 33 1058 Receptor kinase-like Gene Family AT3G02130 43.672 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Pste5g00960 Pkinase 4.8e-42 CL0016