Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00947 ATGGGAAGAGGCCTCTCCCTTTTGATCATGCATCAAAGGAGAAAAGGGAAGGTTTCAACTTTTCTGTTCACCCAGCACCACCTACGAGCCAAGAAGAAGAAGAACAAGAAACTTCTCTATTCCCCTTTATACATCCAATCAACACTGGTGATGATAGAACCCCTTCTACACCAACACCACAATATTATGGGCAAGCAGCGACCATGGGGCAAATGGGCTGCCGAAATTCGCGACCCTAAAAAGGCTGCTAGAGTATGGCTTGGGACGTTTGAGACCGCAGAAGCTGCAGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGATCCAAAGCTAAACTCAATTTCCCAGAACACGAAGGCTTTCCTAACCTAATGCAGTATGCTCAGCTTCTTTGGAGTAAGAATGATGATGAGCTACAACGTGTTGCTTCCGATCTTCATCATCATCACCATTACTATTATCCTCACAATGACATTTCTTCAACTTTGTTCTCATCATCTTCCACTAATTTTATGGCTGTGTCTGAAGGTCAACAGCAGGTTGGAGATGACACGAGTACTACCAAGGGGGAAGAGTTTTATGGTTCATGCTTTTTTAGAGGGAGTGATTTTCATGGCAAGGATTGA 630 0.4413 MGRGLSLLIMHQRRKGKVSTFLFTQHHLRAKKKKNKKLLYSPLYIQSTLVMIEPLLHQHHNIMGKQRPWGKWAAEIRDPKKAARVWLGTFETAEAAAAAYDAAALKFKGSKAKLNFPEHEGFPNLMQYAQLLWSKNDDELQRVASDLHHHHHYYYPHNDISSTLFSSSSTNFMAVSEGQQQVGDDTSTTKGEEFYGSCFFRGSDFHGKD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00947 209 Pfam AP2 domain 66 109 IPR001471 GO:0003700|GO:0006355
Pste5g00947 209 SUPERFAMILY DNA-binding domain 66 117 IPR016177 GO:0003677
Pste5g00947 209 PANTHER DNA-BINDING DOMAIN 62 160 IPR044808 GO:0003700|GO:0009873
Pste5g00947 209 SMART rav1_2 61 123 IPR001471 GO:0003700|GO:0006355
Pste5g00947 209 CDD AP2 66 119 IPR001471 GO:0003700|GO:0006355
Pste5g00947 209 ProSiteProfiles AP2/ERF domain profile. 58 117 IPR001471 GO:0003700|GO:0006355
Pste5g00947 209 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Pste5g00947 209 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Pste5g00947 209 Gene3D AP2/ERF domain 63 118 IPR036955 GO:0003700|GO:0006355
Pste5g00947 209 FunFam Ethylene-responsive transcription factor 2 64 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00947 Pste-Chr5 6208535 6210089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00947 56 118 AP2-EREBP Transcription Factor Family AT5G61890 82.540 2.08e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste5g00947 AP2 2.1e-09 CL0081