Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00936 AAACACATACTATTATATGAATATTATTCCCATATATTCGGCAATGGAGCTTCACCACTCTACTCTGAGCGTGAAGCTAAGCTATTATTACCAACAACACAAAACAAAACCCTTCTCTTCACCGCTTCACAACTTCTTCCTATTAACCGTTTCAAACCCTAGAACCGTCTAATCCTATCCAACTACCACCAACAACTCCTTCGCAAGTTCGTCGCCGCCAAAATTTTTCATATTTAGATGGTGGCCCAATCTCTGGACCTTGTTCATCAGCATTCGATGGTTTCTACAAGGTCGGCGGAGAAGAATTTGGAATCCAAAGTCGCGGTGGCGAATGGCGGAGACAGAGCTGCGGCTGGGAAGAAATCGGGAGAGTTGAAGGGTTCACCAATGCCGCGGCGGTCGAGTGCGCGGATTCGAGCGCTGCAGAAGGCAGAGGAGGAGGAGCTTCTGGCTCGTAAAAAAGCGGAGGAAGTTGAGGAGAAAAAGAAATGCCAGGATGAGGTGACGGTGGTGAAGGGGAAGAAGCGCAGAAGAAAAAGTGGCGGTGAGGAGAGTGTGGTGGCAGAAGAAGAGGCTGTTACGTCGCCGAAGAAGAAGCCGGCGGCTTGCCGGAAGGAGAATGGGAATGAGGAACCGGAAAATGGTGTTTCGCTGGCGGCGTGCTCCAATGGGAAGGTGGAGGAGAATGGAAAGGAGGAATCGGGAAATGTGGGTGGGGGTTTGGGGGAGAAGAGTGACGTGCTTAAGGTGAAGGAGACGATAAGACTGTTTAATAAGCACTACCTTCAGTTAGTTCAGGAAGAAGAGAAGAGGTGTGGGAAGGCTGAGGCTGAGCGGAAAGCTGCAAAAAACGGTTCTAAAAAAGCTTCAAAATCCAAGATGATGCAAAATAATGAGATACTGTACCCAGTGAAAAGAATTGGCGACATTCCCGGTATTGAGGTTGGATATCAGTTCTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTCCATAGTCACTGGTTAAATGGCATTGATTTTATGGGTCAATCCTATGCTAAAGAGTATGACTATGAATTACCAATTGCTGTTGCTATTGTTTTGTCGGGTATGTATGAGGATGATTTGGATAATGCTGAGGAAGTTGTGTACACTGGTCAAGGTGGACATAATTTGACTGGTGATAAGCGTCAAATCCGGGATCAAAAGTTGGAGCGTGGTAACCTGGCTCTTAAGAATTGTTCTGATCAAGGTCTGCCAGTTAGAGTTGTTCGTGGTCATGAATCTTCAAGCAGCTACACTGAGATTCATGCTGCTGCTGCCCTCTACTTCGTTAGTGCCCTCTTATTCAGACAGCCTCAGTCTAGCCATCCTCTATTGCAGGCCTCTGCCCTCCCCTGCTTGACCACCACTGCGAACTCTGAGGAAGGGGAGACAAGGTTTGTTGGGTGGATTGTAGTTTTGCTGATTGTCTTCATGGTGGTTGTCCATCATTGGGCAGAAAAGGGATTATCTGGGTTTACAGTCTACAAGTTTCGACTTAAGAGGCTTGAAGGACAACCTATATTAACTACAAATCAGGTATATTTCACTAATGGACGTGTACCTCAATCTTTAACTGAAATAAGAGGATTGGTTTGTGAGGATATCACTGGAGGATTCAAATACTGTAAGTCTAATAAGGTAGCAAAAAATGTAAAGCTTCCTTTGACTGTCACTGGATGCAAATGCAAAGGCATTTGTAATGACCCAACAACCTGTGCATGTGCGTTGCGTAATGGTTCTGATTTTCCCTATGTATCTCGAGATGGTGGCAGGTTAGTTGAAGCTAAAGATATAGTATTTGAATGTGGTCCCGAATGTGGTTGTGGTCCTGGATTCTGTGAGTACACAGGAATACTTGGAAGGACGGAAGATATGGATAGCGTCCTAGAAAATAATTATATTTTTGAAATAGACTGCTTGCAAACAATCAAGGGGCTTGGTGGAAGAGAGAGACGGTCCCAAGATGGAGAGGTTCCTGCAAATCTTTTGGACAAATATGATCAAAGTTCTGAAAGTATGCCAGAGTTTTGTATTGATGCTGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGTTGTGAGCCTAATCTATTTGTTCAATGTGTTTTGAGCACACACCATGATTTGAGATTGGCTCGTGTGATGCTTTTTGCTGCAGACAATATACCTCCTTTGCAGGAATTAACGTATGACTACGGATATGCACTTGATAGCGTCTTAGACTCCAATGGCAAGATCAAGCAAATGCCATGTTATTGTGGAGCCTCAGACTGTAGGAAGCGATTATTCTAGATATTTTTTTCTTTACAAGAAAAGTTGTATGTAGTCCTTTTGTAAAACCTGTTCATGCGGGGTTGATGTGCGCCCACATATACTTTTGACCGAGATTGTAGAAAAGTAATATTGTAATTTTGTTGTGCAAGAAGTCTTAATGAACAACATAGTTTTTTTTTTTTTTTTAATTTGGTCCTTTAAATATTTTTCAGTTTGATTTTAGTCGAAATTGGTTCTGTTTTCAC 2546 0.4321 MVAQSLDLVHQHSMVSTRSAEKNLESKVAVANGGDRAAAGKKSGELKGSPMPRRSSARIRALQKAEEEELLARKKAEEVEEKKKCQDEVTVVKGKKRRRKSGGEESVVAEEEAVTSPKKKPAACRKENGNEEPENGVSLAACSNGKVEENGKEESGNVGGGLGEKSDVLKVKETIRLFNKHYLQLVQEEEKRCGKAEAERKAAKNGSKKASKSKMMQNNEILYPVKRIGDIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDFMGQSYAKEYDYELPIAVAIVLSGMYEDDLDNAEEVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCSDQGLPVRVVRGHESSSSYTEIHAAAALYFVSALLFRQPQSSHPLLQASALPCLTTTANSEEGETRFVGWIVVLLIVFMVVVHHWAEKGLSGFTVYKFRLKRLEGQPILTTNQVYFTNGRVPQSLTEIRGLVCEDITGGFKYCKSNKVAKNVKLPLTVTGCKCKGICNDPTTCACALRNGSDFPYVSRDGGRLVEAKDIVFECGPECGCGPGFCEYTGILGRTEDMDSVLENNYIFEIDCLQTIKGLGGRERRSQDGEVPANLLDKYDQSSESMPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLRLARVMLFAADNIPPLQELTYDYGYALDSVLDSNGKIKQMPCYCGASDCRKRLF 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00936 693 MobiDBLite consensus disorder prediction 9 23 - -
Pste5g00936 693 Gene3D - 407 445 IPR036987 -
Pste5g00936 693 Gene3D - 210 359 IPR036987 -
Pste5g00936 693 Gene3D SET domain 542 693 IPR046341 -
Pste5g00936 693 ProSiteProfiles Post-SET domain profile. 677 693 IPR003616 -
Pste5g00936 693 SUPERFAMILY PUA domain-like 214 348 IPR015947 -
Pste5g00936 693 SMART G9a_1 224 434 IPR003105 -
Pste5g00936 693 ProSiteProfiles YDG domain profile. 229 430 IPR003105 -
Pste5g00936 693 Coils Coil 62 84 - -
Pste5g00936 693 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 59 542 - -
Pste5g00936 693 Gene3D SET domain 446 541 IPR046341 -
Pste5g00936 693 ProSiteProfiles SET domain profile. 559 663 IPR001214 GO:0005515
Pste5g00936 693 ProSiteProfiles Pre-SET domain profile. 487 542 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pste5g00936 693 SMART set_7 527 669 IPR001214 GO:0005515
Pste5g00936 693 MobiDBLite consensus disorder prediction 92 138 - -
Pste5g00936 693 MobiDBLite consensus disorder prediction 92 132 - -
Pste5g00936 693 SUPERFAMILY PUA domain-like 408 464 IPR015947 -
Pste5g00936 693 SUPERFAMILY SET domain 467 690 IPR046341 -
Pste5g00936 693 SMART preset_2 441 536 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pste5g00936 693 Coils Coil 179 206 - -
Pste5g00936 693 Pfam Pre-SET motif 465 542 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pste5g00936 693 Pfam SAD/SRA domain 228 347 IPR003105 -
Pste5g00936 693 MobiDBLite consensus disorder prediction 1 55 - -
Pste5g00936 693 Pfam SET domain 598 663 IPR001214 GO:0005515
Pste5g00936 693 SMART PostSET_3 677 693 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00936 Pste-Chr5 6120521 6140326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00936 215 693 EF-hand Containing Proteins AT5G13960 51.852 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pste5g00936 SET 3e-13 No_clan