LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g00934	AAAACATAAAGAAATGGCTGTCACTTTCTCTCTCTTGCCCAGCCTGCCCATTTGCCAACTTTCTCAATTGAAGCCTGCCCGGCCGGCCCGTTGTTGAAAAACTCTCTCTTTCACATGCAGTTTCCCACTGCCTCTCTCCTCCACCACCTACAGCCCCTTTGGACAGATTTTCTGAACTGGGTTTGTGTTTGTTTTTTTACTCAATTATCTGCGTACTTGTGTTGATCCTTTTGTTGTGATTCAAAACAGTGATGTTGTTCTTTTGGTTCTGTTGATTATGATCATGATCATGATGGGTTCCAAAGTCTTCAATAATTGAAGTGAGGTTGCTTTAAGTGTATTTTATTTATTTGTACCTTTTTTCCCCCTAAAGTCTGAAACCTGTGGGGACTTTTGAGCATGAAAAGTTCTGTGTAAGAGTTTGTGGAAGATGGGGTTTAAGAATAATGCAATTCAGGCTGGGAGTTTGGATGTGGGAAAGTCAAAGGTAAAGATGCAAAAGGATGGTTCTGAAAAGGAAATTGGATGCTGTGTTAAATTCTGTTTTATTGGGAGCTGTATACCTTCAAGATCAAAGGTTGATAACTCCATAAGTGGCACTAGTGCTCACAGTGTGGAAAAAACATCTTCATGTGAGAAAAGCAAGGAAACAAATGCTCCTCCAGGGTCCTCTACAACTGTCAGTAATGCAGAAAGTATCCCATCCACTCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGATTGAGAAAATTTACATTCAATGAGCTTAAGTTGGCTACTAGAAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGCGTGTTCAAGGGTTGGATTGAGGAAAATGGAACTGCACCTGTGAAACCTGGTACTGGGCTTACCGTTGCTGTCAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTTGGTGACCTTGTCCATCCGAATCTTGTCAAATTGGTTGGTTTTTGTATTGAAGATGACCAAAGATTATTGGTTTATGAATGTATGCCCCGCGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTGCTTTTCTCCACCAAGAAGCTGAGAGGCCTGTGATATATCGTGATTTTAAGACGTCTAATATTCTGTTAGATGCGGAATACAATGCCAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCAGAAGGGGAAAAGACACACATATCAACAAGAGTCATGGGAACATATGGTTATGCAGCTCCTGAGTATGTAATGACTGGACATTTGACATCAAAGAGTGATGTGTATAGTTTTGGAGTAGTGCTACTTGAAATGTTGACTGGCCGGCGATCCATAGATAAGAATAGACCAAATGGGGAACACAATCTTGTGGAGTGGGCAAGGCCTGTGCTTGGGGACAGGAGGATGTTACTACGGATAATTGATCCTCGCCTTGAAGGTCACTTCTCTATTAAAGGGTCACAGAAGGCTGCACAGCTGGCTGCTCAATGCCTTAGCCGTGATCCAAAATCCAGACCTATGATGAGTGAAGTTGTTCAAGCTCTGAAGCCTTTGCAAAACCTCAAGGATATGGCTATCTCAACCTATCATTTCCAAGTTGCTCGAGTAGATCGTACCATGTCCATGCCAAATTCTAAAAATGGTATGCAAGCACAGTTAACATCTTTATCAAGGAAGGGTCAACCTGTAAGGGTCTTATCGAGTCCAAAAGGTGCTCATGGCTCTCCATGTCATCATTATATCAAGTCACCAAAACCTAATGGATAAGAATGATGGTGCTCGCTTTGATTTGCTAAGTGATTCACTCAGTTCCTTCAACTTAGGCGGACAGAAACTGTTTGTTTTTCCGAAAATTGCTCTCAAATAAGAGGAATCATTATAGTTTTCTGACCTTATCTTATCTCAAATAAGGTTGAGGAGACCATGAGACACTTTACTACTGGATTACAAAGTTTAGCGGGGACCGAGTTGATCAAACTTGAATAGAAAACTAAAAAAGTACAGTTTTCACATGGGGAATTTGTTACTGTGAAGTTGCTATACTTTTTCTACCATTTCACAGGCTTTCTTCATCCTTTCAGAATGTATTTTTGTAAAGAAAACAGTTGGTGATGTTAACTCATGTACGTTATTCATAGATATTTTACCATACTCATTCGGCAATGTACTTTTCAGTTAATACTTATCAATGTAATTAAATGTTGTACTAGAAACATGCATGCTAATGTTTGGGATTTGAACGACTAAAAAGTTCTG	2347	0.4078	MGFKNNAIQAGSLDVGKSKVKMQKDGSEKEIGCCVKFCFIGSCIPSRSKVDNSISGTSAHSVEKTSSCEKSKETNAPPGSSTTVSNAESIPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHPNLVKLVGFCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHQEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSIKGSQKAAQLAAQCLSRDPKSRPMMSEVVQALKPLQNLKDMAISTYHFQVARVDRTMSMPNSKNGMQAQLTSLSRKGQPVRVLSSPKGAHGSPCHHYIKSPKPNG	475

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g00934	475	SUPERFAMILY	Protein kinase-like (PK-like)	95	402	IPR011009	-
	Pste5g00934	475	MobiDBLite	consensus disorder prediction	442	475	-	-
	Pste5g00934	475	Gene3D	Transferase(Phosphotransferase) domain 1	207	425	-	-
	Pste5g00934	475	PANTHER	OS01G0588500 PROTEIN-RELATED	74	406	-	-
	Pste5g00934	475	CDD	STKc_IRAK	127	405	-	-
	Pste5g00934	475	FunFam	Serine/threonine-protein kinase BIK1	88	206	-	-
	Pste5g00934	475	MobiDBLite	consensus disorder prediction	61	92	-	-
	Pste5g00934	475	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	251	263	IPR008271	GO:0004672\|GO:0006468
	Pste5g00934	475	Gene3D	Phosphorylase Kinase; domain 1	101	206	-	-
	Pste5g00934	475	Pfam	Protein kinase domain	124	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g00934	475	MobiDBLite	consensus disorder prediction	71	92	-	-
	Pste5g00934	475	FunFam	Probable serine/threonine-protein kinase PBL8	207	422	-	-
	Pste5g00934	475	ProSitePatterns	Protein kinases ATP-binding region signature.	127	159	IPR017441	GO:0005524
	Pste5g00934	475	ProSiteProfiles	Protein kinase domain profile.	121	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g00934	Pste-Chr5	6114149	6118447	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g00934	79	418	Glycoside Hydrolase	AT3G07070	51.705	4.90e-116	345

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Pste5g00934		Pkinase	5.1e-48	CL0016