Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00928 ATGGCAGGAGGTGCAAGTAAGATTACCTTTATCTTCTTGGTTGCTTTTGCCATTACTATTCCAAGCCTTGAGGCGGGCATTGGCAACTACGATGAATATATCAGAGAACAAGAAGTTGAAGCCCATGAAATCGCTCTGGAATCGTACGTGCCCGACCCTATAAACATTACAGACGAGTTCAACGTGCATGTTAATAGGGCATTGCGGGAGGGATTAAAAGACGAAGCAAACAGCACAAGGAGGCAACTAAAGCAAAAATACCGTGGACCATGCTTGGCCCTCAACCCAATCGATCGATGTTGGAGGTGTAAGAGCAACTGGGCGAAGAACCGTTTCAGGTTGGCCAAATGTGTCAAGGGTTTCGGAAGAAAGGCAGTAGGAGGAGTCGATGGCAAAATCTACACAGTTACTGACCCCTCCGATGAGGACCCCATTAACCCTAAACCCGGAACTCTCAGGTACGGTGTACTCCAAAAGGAACCATTGTGGATCATATTTGCACGAAGCATGGTGATCAAATTGAATTTCGAGTTACTGGTTGCATCAGACAAAACCATCGATGGTCGCGGAGCACATGTGGTGATCAAGGATGGTGCTGGAATTACCATGCAGTTTGCGAACAACATTATTATTCACGGGCTTCACATAAGAAAAATAAAGTCCGTGGAAGGTGGCATGATTAGGGACTCGTGGAACCACGTTGGAATAAGAACCAGGGCTGATGGGGATGCTATCTCCGTTTTTGGTTCTTCCAACATTTGGATCGATCACATTTCCTTGTCTGATTGCGAGGATGGTCTGGTCGACGTTATCCAGGGCTCCACCGGGATCACCATCTCAAATTGCCACATGACCAAGCATAACGATGTGATGCTGTTTGGAGCGAGCGACACGTACAAAGATGACAAGATAATGCAGATTACAGTGGCATTCAACCACTTTGGTCAGGGTCTGATTCAGAGAATGCCGAGATGCAGATGGGGGTTCTTCCATGTGATAAACAACGACTACACTCACTGGCAGATGTATGCAATAGGAGGGAGTTCAGAGCCAACAATTCTGAGCCAAGGAAACAGGTTTATAGCACCAAACAACCATGCAGCAAAGGAAGTGACACACAGGAGCTATGCTGCACCTGCAGTGTGGGAGAAGTGGCAATGGAGATCAGAGAACGATCTGTTCATGAATGGGGCAAAGTTTGTGGAGTCAGGACCACCCATTGGGAAGCTCCCATTCAACAAAGGCTTCCTAATGAAACCAAGACGTGGGATGCATGCCAGTAGGCTCACACGCTTTTCTGGTGCCCTCAATTGCAAGGTTGGTAAGCCTTGCTAG 1335 0.4742 MAGGASKITFIFLVAFAITIPSLEAGIGNYDEYIREQEVEAHEIALESYVPDPINITDEFNVHVNRALREGLKDEANSTRRQLKQKYRGPCLALNPIDRCWRCKSNWAKNRFRLAKCVKGFGRKAVGGVDGKIYTVTDPSDEDPINPKPGTLRYGVLQKEPLWIIFARSMVIKLNFELLVASDKTIDGRGAHVVIKDGAGITMQFANNIIIHGLHIRKIKSVEGGMIRDSWNHVGIRTRADGDAISVFGSSNIWIDHISLSDCEDGLVDVIQGSTGITISNCHMTKHNDVMLFGASDTYKDDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVINNDYTHWQMYAIGGSSEPTILSQGNRFIAPNNHAAKEVTHRSYAAPAVWEKWQWRSENDLFMNGAKFVESGPPIGKLPFNKGFLMKPRRGMHASRLTRFSGALNCKVGKPC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00928 444 Gene3D - 94 437 IPR012334 -
Pste5g00928 444 SUPERFAMILY Pectin lyase-like 95 414 IPR011050 -
Pste5g00928 444 Pfam Pectate lyase, N terminus 27 83 IPR007524 GO:0030570
Pste5g00928 444 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Pste5g00928 444 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Pste5g00928 444 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Pste5g00928 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Pste5g00928 444 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Pste5g00928 444 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Pste5g00928 444 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Pste5g00928 444 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Pste5g00928 444 SMART amb_all 169 366 IPR002022 -
Pste5g00928 444 PANTHER PECTATE LYASE 18-RELATED 42 442 IPR045032 GO:0030570
Pste5g00928 444 Pfam Pectate lyase 180 360 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00928 Pste-Chr5 6070589 6072238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00928 6 444 Polysaccharide Lyase AT5G15110 53.846 0.0 520
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00928 5 6070589 6072238 Pste5g00928 5 6070589 6072238 ECH
Pste1g00818 1 2542720 2545455 Pste5g00928 5 6070589 6072238 ECH