Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00920 TTTATATATGCGTATGAGATTGAGGGAGCTCTATTAATAGAGAAATAGTAATAATTGAGGCTACATTGTCAAAAATGTATAGTCCTAGTGGTCCAGAGATCGAAGAGAAGAGAGTTGCAAAGGAAGATAAATTCAAATCTGCTGAAACTGAAATGGGCGAGGTGAAGGAAGAAAATGAGAGATTGAAGACGATGCTGGAGCGAGTAGAAAAGGATTATCACTCTCTTCAACTCCGTTTCTTTGACATCCTTAACAAAGATGTTTCAAAGAAGGGTGCTGTAGCTGATACATCTACTTCCCATGATCATGAAACTGAAGAGCCTGTGCTTGTGTCACTTTGCCTGGGAAGAACTCCAAGGGAGCCTATGAAGGAAGCAATGATTGAAAATTCCAACAAACCAAAAGAAAAAGATGTGGGAACCAACCTTACGCTTGGATTGGATTCCAAGCACATGTTATCAATGGCTATGGCCCTGGAGGTTGTGTCTGATTTAAGTCCTACAATGAGCTCAGAAGAACCAAAGGAAGTTGAAGCAGAGGGTACATTGTCAACAAATCAACCTGCAAAAGTGATTAACTTAAACGAAGACATTTCAGATCAAATGCCTGCCAAGAGAGCCAGGATGAATGATTGGTGCCAATGGAGGAAATATGGACAGAAGATAGCAAAGGGAAATCCATGTCCAAGGGCATACTATCGTTGCACAGTTTCACCAACATGCCCAGTCAGGAAGCAGGTGCAAAGATGTGCTGAGGACTTGTCCATCTTAATCACCACCTATGAAGGAACGCATAACCATCCGCTTCCAGTTTCAGCCACAGCCATTGCTTCAACAACTTCTGCTGCTGCTTCCATGCTGTTGTCAGGTTGTTCAACATCTCACTCTGCAAGCCACATTTCTGCACCTTTAGGAAATTCTGCTACCCCACTACTGAATGGTCTGAGTTTCAGTCAGCAGTTTGATGAATCTAGAGCCAAACAAATCTTCTCACCACCAAACCATGTCTCAACAAATCTGTTCCCAACAATCACTCTAGACCTGACTAATTCTTCAGCTTCTTCCTCCTCATCAACTCATCAACTCCATCATTGCTTACCTTCAACCATGGCTTCAGTTTCAAACCCAAGATTTTCTTCAACAGATCTCAGCTTTTGTTCCCCAGAGCAAAGTTTCTTACCCGCCTCCATTTGGGGTAAGGGGTTCTCTGATAATGTTATAACTTCAACACCAATTGACAAAGTCCCTGCAAGGCCAATTATGCAGTCAAATAATTTCCAACAACGTTTCTACCAACAATTCACAACAAATTACCAAAGTCCCTCCAGAGAAGCTTTGGCAGAAACAATAACCAAAGCAATCAGCACAGACCCGAGTCTTCGTTCAGTAATAGCTGCTGCAGTTTCATCAATAGTGGGGCATGGATCAGATAGTCTGAACGAGGGAGCAGAGGATGTTCATGGTTCAAGGTTGAACTTAAAACTAGGGGAGCATCTTCAATATGCTTCAACCAATCCCTTGAACCAGAATGGAAAAGCATGCTTAGCAGGCTACTTCAAAAGTTTTCCCTCTAAGAGTTCCGAGCCAGGAATTCTCCAATCACCATTGCCATATCTTTTTTCCAAAGGTAGCACAAATCAGATCAACCATTATGTTCCAGAAATGAACACAAATCATTAGCTTTCATGCATTCTCTTCCTCTATGACGTATTCAAGATCCTATTATTTCATTTCAAAATAGGACTCCTAAAACAAGAGATTAAGTTTAGAGCAAAGAGAATGGGTAGAAATCAATGTTGTCTACCAATATAGTTTTTCCATGCCATTTTTCTAGCAGTAACTCCTAAGAGTCTATAGACAACCTATTACAGAAATTACTACTACAAACGATTGCTCCAAAATCAATGGATCATTACGAGGCATACATGCATGCCTCTTTTTTTTCTTTGTTTCTTTTTTTTTCAGTTCAGTCAATTATTTAACTAATTTATTTGCTTAGCTTTCTGCCCACTGTTACAATTATCTGTAACTGACAACCTCTTTAGATGCAATAACATTAGTGACGACTTATATCTAA 2076 0.4027 MYSPSGPEIEEKRVAKEDKFKSAETEMGEVKEENERLKTMLERVEKDYHSLQLRFFDILNKDVSKKGAVADTSTSHDHETEEPVLVSLCLGRTPREPMKEAMIENSNKPKEKDVGTNLTLGLDSKHMLSMAMALEVVSDLSPTMSSEEPKEVEAEGTLSTNQPAKVINLNEDISDQMPAKRARMNDWCQWRKYGQKIAKGNPCPRAYYRCTVSPTCPVRKQVQRCAEDLSILITTYEGTHNHPLPVSATAIASTTSAAASMLLSGCSTSHSASHISAPLGNSATPLLNGLSFSQQFDESRAKQIFSPPNHVSTNLFPTITLDLTNSSASSSSSTHQLHHCLPSTMASVSNPRFSSTDLSFCSPEQSFLPASIWGKGFSDNVITSTPIDKVPARPIMQSNNFQQRFYQQFTTNYQSPSREALAETITKAISTDPSLRSVIAAAVSSIVGHGSDSLNEGAEDVHGSRLNLKLGEHLQYASTNPLNQNGKACLAGYFKSFPSKSSEPGILQSPLPYLFSKGSTNQINHYVPEMNTNH 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00920 534 Coils Coil 13 54 - -
Pste5g00920 534 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 11 453 IPR044810 GO:0003700
Pste5g00920 534 Gene3D WRKY domain 171 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste5g00920 534 SMART WRKY_cls 184 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste5g00920 534 MobiDBLite consensus disorder prediction 1 32 - -
Pste5g00920 534 SUPERFAMILY WRKY DNA-binding domain 181 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste5g00920 534 Pfam WRKY DNA -binding domain 185 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste5g00920 534 ProSiteProfiles WRKY domain profile. 179 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste5g00920 534 MobiDBLite consensus disorder prediction 9 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00920 Pste-Chr5 5992580 5996429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00920 27 497 WRKY Transcription Factor Family AT5G15130 40.792 1.41e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pste5g00920 WRKY 1.3e-22 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00920 5 5992580 5996429 Pste5g00920 5 5992580 5996429 ECH
Pste5g00920 5 5992580 5996429 Pste6g02515 6 12435759 12442075 ECH
Pste1g00854 1 2637609 2639978 Pste5g00920 5 5992580 5996429 ECH